Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30478
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...    68   2e-12
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily ass...    26   7.3  
Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 33/49 (67%), Positives = 39/49 (79%), Gaps = 2/49 (4%)
 Frame = -1

Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRAN 103
           TV +QG R+AREA +HFGPAPG P SHTKPYVR+KG   E+AR  RRA+
Sbjct: 136 TVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRKFERAR-GRRAS 183



 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 30/37 (81%), Positives = 35/37 (94%)
 Frame = -2

Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 255
           VPK++VAALHVTE ARARILAAGGEI+T DQLAL++P
Sbjct: 95  VPKISVAALHVTEGARARILAAGGEIITLDQLALKSP 131


>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
           protein K02F6.4 protein.
          Length = 1193

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 234 PVLSSCQRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRN 365
           PVL         + +K+KNF+SS  +    F  N+++   H +N
Sbjct: 521 PVLKGTNLVDTLECLKNKNFNSSLASDVLKFGSNIRAFGVHAKN 564


>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 216 HFADLVPVLSSCQRSTKSQLIKSKNFSSSSQNACT 320
           H  D +  L  CQ    S   +    S+S+ NAC+
Sbjct: 26  HHRDTIAALDLCQLEPSSPAPRPDEISASTMNACS 60


>U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 320 protein.
          Length = 440

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 93  KIRH*HDDWALLFHVPWCEHRV*CESAV 176
           K+ +  D W + F+ PWC H   C+S V
Sbjct: 37  KVINSDDIWIVEFYAPWCGH---CKSLV 61


>Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical
           protein C09H6.3 protein.
          Length = 593

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 163 VRARCSWSRAKVTHCLTSISLTLYQYCLLASG 258
           VR    WS+    H +   S +LY+  LLA+G
Sbjct: 504 VRPTVDWSKKSHDHVVILFSHSLYEKILLAAG 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,544,203
Number of Sequences: 27780
Number of extensions: 137051
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)