Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30478
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.0  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   6.1  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   6.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   8.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   8.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   8.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 357 DDGGCSSCYRKSSCTHFGCWRRNSY 283
           +DGGCSS    S+  +   +++N Y
Sbjct: 924 NDGGCSSLVDVSTPVNKKVYKQNDY 948


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 220 SLTLYQYCLL 249
           S+T Y YCLL
Sbjct: 69  SITCYMYCLL 78


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 220 SLTLYQYCLL 249
           S+T Y YCLL
Sbjct: 69  SITCYMYCLL 78


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 307 WLLEEKFLLLISWLFVLRWQEDS 239
           W L    L + S+LFV+  Q+ S
Sbjct: 8   WTLAVNVLFVNSFLFVIAAQDSS 30


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 307 WLLEEKFLLLISWLFVLRWQEDS 239
           W L    L + S+LFV+  Q+ S
Sbjct: 8   WTLAVNVLFVNSFLFVIAAQDSS 30


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 307 WLLEEKFLLLISWLFVLRWQEDS 239
           W L    L + S+LFV+  Q+ S
Sbjct: 8   WTLAVNVLFVNSFLFVIAAQDSS 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,776
Number of Sequences: 438
Number of extensions: 1579
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)