Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30478
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi...    70   4e-13
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ...    68   2e-12
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)            66   9e-12
At2g02640.1 68415.m00203 DC1 domain-containing protein   contain...    31   0.24 
At1g32190.1 68414.m03959 expressed protein                             27   2.9  
At5g01440.1 68418.m00057 insulin-degrading enzyme-related contai...    26   9.0  
At3g43682.1 68416.m04659 hypothetical protein                          26   9.0  
At1g77655.1 68414.m09041 expressed protein                             26   9.0  
At1g07960.3 68414.m00867 thioredoxin family protein low similari...    26   9.0  
At1g07960.2 68414.m00866 thioredoxin family protein low similari...    26   9.0  
At1g07960.1 68414.m00865 thioredoxin family protein low similari...    26   9.0  
At1g05440.1 68414.m00552 expressed protein ; expression supporte...    26   9.0  

>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
           to GB:P42791
          Length = 187

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 31/48 (64%), Positives = 39/48 (81%), Gaps = 2/48 (4%)
 Frame = -1

Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 106
           TVL++G +N+REAV+HFGPAPG P SH+KPYVR KG   EKAR  R++
Sbjct: 135 TVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKS 182



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = -2

Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPLAR 246
           +P M V AL  TE+ARARI  AGGE LTFDQLALRAPL +
Sbjct: 94  IPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQ 133


>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
           ribosomal protein L18, Arabidopsis thaliana,
           SWISSPROT:RL18_ARATH
          Length = 187

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 31/48 (64%), Positives = 39/48 (81%), Gaps = 2/48 (4%)
 Frame = -1

Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 106
           TVL++G +N+REAV+HFGPAPG P S+TKPYVR KG   EKAR  R++
Sbjct: 135 TVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKS 182



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = -2

Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPLAR 246
           +P M V AL  TE+ARARI  AGGE LTFDQLALRAPL +
Sbjct: 94  IPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQ 133


>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
          Length = 135

 Score = 65.7 bits (153), Expect = 9e-12
 Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
 Frame = -1

Query: 243 TVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 106
           TVL++G +N REAV+HFGPAPG P SHTKPYVR  G   E AR  RR+
Sbjct: 83  TVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRS 130



 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 26/37 (70%), Positives = 27/37 (72%)
 Frame = -2

Query: 365 VPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 255
           VP +TV AL  TE ARARI  AGGE LTFDQLAL  P
Sbjct: 41  VPALTVTALRFTESARARIHKAGGECLTFDQLALPCP 77


>At2g02640.1 68415.m00203 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 345 CSSCYRKSSCTHFGCWRRNSYF 280
           CS+C RKS+   + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 345 CSSCYRKSSCTHFGCWR 295
           CSSC+ K  C    CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375


>At5g01440.1 68418.m00057 insulin-degrading enzyme-related contains
           weak similarity to Swiss-Prot:P14735 insulin-degrading
           enzyme (Insulysin) (Insulinase) (Insulin protease) [Homo
           sapiens]
          Length = 307

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 310 FWLLEEKFLLLISWLFVLRWQEDSTGTRSAKCS*GSASLWPCSRSTAL 167
           F+  E+K L LI+   ++ W +      S KC     S+W C+    L
Sbjct: 154 FYSEEKKELSLITKNDLIEWYKRYVRLSSPKCCSFVVSIWGCNTKNGL 201


>At3g43682.1 68416.m04659 hypothetical protein
          Length = 150

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 204 LPHEHFADLVPVLSSCQRSTKSQLIKSKNFSSSSQNACTSFFGNMK 341
           LP E F+D+VP  S C+ S+ S    SK   S + +    F G  K
Sbjct: 3   LPLE-FSDIVPSESICKPSSASASSSSKGCESQNSHNRNCFKGFFK 47


>At1g77655.1 68414.m09041 expressed protein
          Length = 96

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 207 AVRHFGPAPGAPRSHTKPYVR 145
           +V H    P +PR H+ PYVR
Sbjct: 27  SVIHCSKVPISPRRHSSPYVR 47


>At1g07960.3 68414.m00867 thioredoxin family protein low similarity
           to protein disulfide isomerase 4 [Giardia intestinalis]
           GI:13489047; contains Pfam profile PF00085: Thioredoxin
          Length = 146

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 93  KIRH*HDDWALLFHVPWCEH 152
           KI+     W + F VPWC+H
Sbjct: 38  KIKEKDTAWFVKFCVPWCKH 57


>At1g07960.2 68414.m00866 thioredoxin family protein low similarity
           to protein disulfide isomerase 4 [Giardia intestinalis]
           GI:13489047; contains Pfam profile PF00085: Thioredoxin
          Length = 146

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 93  KIRH*HDDWALLFHVPWCEH 152
           KI+     W + F VPWC+H
Sbjct: 38  KIKEKDTAWFVKFCVPWCKH 57


>At1g07960.1 68414.m00865 thioredoxin family protein low similarity
           to protein disulfide isomerase 4 [Giardia intestinalis]
           GI:13489047; contains Pfam profile PF00085: Thioredoxin
          Length = 146

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 93  KIRH*HDDWALLFHVPWCEH 152
           KI+     W + F VPWC+H
Sbjct: 38  KIKEKDTAWFVKFCVPWCKH 57


>At1g05440.1 68414.m00552 expressed protein ; expression supported
           by MPSS
          Length = 393

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 225 DLVPVLSSCQRSTKSQLIKSKNFSSSSQNACTSF 326
           DL+P+  S Q+S+ ++L  + NF S+ ++  TSF
Sbjct: 80  DLMPL--SVQKSSLTKLSSASNFKSTVESTPTSF 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,085,332
Number of Sequences: 28952
Number of extensions: 124907
Number of successful extensions: 383
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)