Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30477
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 29 0.49
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.86
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 2.6
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.6
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 27 2.6
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.5
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 27 3.5
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 4.6
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 26 6.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 8.0
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 29.5 bits (63), Expect = 0.49
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 174 LHISEPPTQLQPVTQPSVADRAPSTLVLASLRTMTFRARPP--TAKKGSASTITCAMRPI 347
+ + PPT+ PS +D A STL SL P T + + +T + PI
Sbjct: 10 ISLGYPPTESSAHLAPSFSDSATSTLSFKSLLEDPVNPIRPVYTPTRTEITPVTLSPIPI 69
Query: 348 TPLSLTEP 371
TP+ +P
Sbjct: 70 TPVREFQP 77
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.86
Identities = 21/89 (23%), Positives = 35/89 (39%)
Frame = +3
Query: 195 TQLQPVTQPSVADRAPSTLVLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEPT 374
T + P T + P T SL T T A PPT S +T+ + ++ PT
Sbjct: 82 TTVPPTTSMNTTTTVPPT---TSLNTTTTTA-PPTTHVNSTTTVVPPTTHVNTTTVVPPT 137
Query: 375 SSI*ESAVARVHRTSTSAVWLPTRDRQQI 461
+ + + V + + ++PT I
Sbjct: 138 THVNTTTVVPPTTHANTTSFVPTTTESSI 166
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 439 RPETANRSHHAQAGDPANEPGLRRRNPDGVA-FRTTGDVD 555
RP N+ AQ G P+ G R+ V+ F TT D++
Sbjct: 72 RPNLLNKFMSAQDGTPSKSTGFNERSSQLVSEFTTTEDIE 111
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 294 PTAKKGSASTITCAMRPITPLSLTEPTSSI*ESAVARVHRTST 422
P + +T TC+ RP +S TS++ ES + TST
Sbjct: 567 PEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 139 DTGDLESIINQIFTSANPRRNCSRSRSLVSLTGLH 243
D DLE ++ ++ + PR + S+ LV + GL+
Sbjct: 303 DMTDLERVLREVISQGQPRTHRPYSKILVVIEGLY 337
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 435 LPTRDRQQIPSRPGRRP 485
LP+R +PSRPG RP
Sbjct: 114 LPSRGTPSLPSRPGSRP 130
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 376 DVGSVSDNGVIGRIAQVIVDALPFLAV 296
++ + NG++ RI QV+ D L +L++
Sbjct: 304 EIDEIGVNGIVERIKQVVGDTLVYLSI 330
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 232 TGLHRPWC 255
TGLHRPWC
Sbjct: 684 TGLHRPWC 691
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 572 PNLVSPSTSPVVRKATPSGFRRRS 501
PN +SPST P++ + S FR S
Sbjct: 253 PNRLSPSTQPLLSNSRHSSFRLAS 276
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 210 VTQPSVADRAPSTLVLASLRTMTFRARPPTAKKGSAS-TITCAMRPITPLSLTEPTSSI* 386
+T S+A + ++ LAS T + + PT+ S+S + T A T SL + +
Sbjct: 144 ITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNST 203
Query: 387 ESAVARVHRTSTSA 428
SA A S++A
Sbjct: 204 TSATATSSSLSSTA 217
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/81 (22%), Positives = 31/81 (38%)
Frame = +3
Query: 183 SEPPTQLQPVTQPSVADRAPSTLVLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSL 362
S T L V + + + L + T T + P S + + + P+T ++
Sbjct: 435 SASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 494
Query: 363 TEPTSSI*ESAVARVHRTSTS 425
T TS+ + TSTS
Sbjct: 495 TSATSASSTPLTSANSTTSTS 515
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.0
Identities = 23/98 (23%), Positives = 35/98 (35%)
Frame = +3
Query: 189 PPTQLQPVTQPSVADRAPSTLVLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTE 368
P + P PS+ P V SL PP + +S RPI P+S+
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERV-PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Query: 369 PTSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSRPGRR 482
+S + + ++A + R P P RR
Sbjct: 283 AINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRR 320
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 8.0
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +3
Query: 207 PVTQPSVADRAP---STLVLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEPTS 377
P+T SV + + S+ VL S +T T+ ++ST+ + PIT ++ ++
Sbjct: 1619 PITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVNTST 1678
Query: 378 SI*ESAVARVHRTSTSAVWLPT 443
I S V TS+ L T
Sbjct: 1679 PITSSTVVNSSTPITSSTALNT 1700
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,708
Number of Sequences: 5004
Number of extensions: 52690
Number of successful extensions: 206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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