Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30477
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0498 + 3734498-3734976,3736176-3736800 32 0.51
02_05_1314 - 35661824-35661912,35662031-35662454,35662689-356627... 31 0.67
02_04_0356 - 22331622-22331704,22331799-22332083,22332186-22332306 31 0.89
03_06_0549 - 34664552-34664901,34665013-34665109 31 1.2
03_06_0242 + 32596846-32597268 31 1.2
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 30 1.6
04_03_0845 - 20245836-20246046,20246137-20246219,20246330-202464... 30 1.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.1
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 29 3.6
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 3.6
07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253 29 4.8
05_03_0219 + 10451316-10451718,10451812-10452008 29 4.8
04_04_1375 + 33040329-33040854,33041611-33041838,33041984-330420... 29 4.8
01_05_0066 + 17794394-17794877,17795015-17795031 29 4.8
02_04_0357 - 22339691-22339773,22340087-22340371,22340407-22340524 28 6.3
02_01_0289 - 1937125-1937385,1937570-1937611 28 6.3
01_03_0311 + 14905995-14906393,14906982-14907009,14907893-149079... 28 6.3
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 28 8.3
06_01_1197 - 10298410-10298670,10298860-10298901 28 8.3
05_03_0107 - 8470386-8470559,8470694-8471737 28 8.3
04_04_0819 - 28312667-28313219,28315157-28316430 28 8.3
>07_01_0498 + 3734498-3734976,3736176-3736800
Length = 367
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 376 DVGSVSDNGVIGRIAQVIVDALPFLAVGGLARKV 275
D +D+GV+ IA +VD FLA GG+ R V
Sbjct: 26 DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59
>02_05_1314 -
35661824-35661912,35662031-35662454,35662689-35662787,
35662886-35662995,35663263-35663516,35664080-35664098,
35664834-35665075,35665662-35666401
Length = 658
Score = 31.5 bits (68), Expect = 0.67
Identities = 26/80 (32%), Positives = 37/80 (46%)
Frame = +3
Query: 189 PPTQLQPVTQPSVADRAPSTLVLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTE 368
PP+ P+ PS+A + S+ L SL + R R PT K +T T A P P L+
Sbjct: 3 PPSAGTPLPPPSLAAASTSSCFLPSLLPIR-RRRWPTPK----ATATAAFPPRRPAPLSA 57
Query: 369 PTSSI*ESAVARVHRTSTSA 428
+ V+ TSTS+
Sbjct: 58 NNLPLHTPGVSETTSTSTSS 77
>02_04_0356 - 22331622-22331704,22331799-22332083,22332186-22332306
Length = 162
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 310 PFLAVGGLARKVIVRRDASTRVDGALSATLGCVTGCNCV 194
P + G +A ++I R +S GAL A + +TGCNCV
Sbjct: 48 PCITFGQIA-EIIDRGSSSCGTSGALYALVMLLTGCNCV 85
>03_06_0549 - 34664552-34664901,34665013-34665109
Length = 148
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 310 PFLAVGGLARKVIVRRDASTRVDGALSATLGCVTGCNCV 194
P + G +A +++ R S GAL A L VTGC C+
Sbjct: 40 PCITFGRVA-EIVDRGSTSCGASGALYALLAMVTGCQCI 77
>03_06_0242 + 32596846-32597268
Length = 140
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = +3
Query: 189 PPTQLQPVTQPSVADRAPSTLVLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTE 368
PP QP QP+V RAPS + ++ A P A SAS P++ L
Sbjct: 49 PPKYQQPGHQPAVVYRAPSAKEVEQKLFVSETALAPPAAAASAS---AGEAPVSKKGLAH 105
Query: 369 PT 374
PT
Sbjct: 106 PT 107
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 452 PTDPITPRPETLPMNQGCGGGTLTALPS 535
PT+PIT RP LP + T +A PS
Sbjct: 44 PTNPITARPRPLPSDTTAAASTCSASPS 71
>04_03_0845 -
20245836-20246046,20246137-20246219,20246330-20246470,
20246561-20247421
Length = 431
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +2
Query: 500 GCGGGTLTALPSGPRATWTAR 562
G GGGT T S P A WTAR
Sbjct: 65 GLGGGTRTTASSSPIAPWTAR 85
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/52 (40%), Positives = 22/52 (42%)
Frame = +2
Query: 392 GSGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCGGGTLTALPSGPRA 547
GSGP AP RPP P P +G GG ALP GPRA
Sbjct: 346 GSGPPPPPPPAAPAAP--RPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRA 395
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -2
Query: 268 RRDASTRVDGALSATLGCVTGCNCVGGSLM*RSD**STPDPRCPCSARTPTRESR*VE 95
R ++ D A A C++GC GG R S +CP RT T + R V+
Sbjct: 384 RSAVASESDLAAVAATTCLSGCREAGGPWTWRESPASRAMQKCPACKRTHTGDGRTVK 441
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 550 VDGETKFGEFPWMVAILKVEPVDDNEP 630
+DGE EFP+ + VE DD+EP
Sbjct: 1197 LDGEESLAEFPYASFLQTVETSDDSEP 1223
>07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253
Length = 306
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 189 PPTQLQPVTQPSVADRAPSTLVLASLRTMTFRARPPTAKKGSASTITCAMRPITPL 356
PP +QP Q AP++L +S + ++P A A ++T AM ++PL
Sbjct: 238 PPQPVQPQQQLVSPVAAPTSLSSSSSDRSSGSSKPARATLTQAMSVTAAMDLLSPL 293
>05_03_0219 + 10451316-10451718,10451812-10452008
Length = 199
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +3
Query: 162 H*SDLHISEPPTQLQPVTQPSVADRAPSTLVLASLRTMTFRARPPTAKKGSASTITCAMR 341
H ++ H++ P + + + +V R +++SL+ + RP +A I R
Sbjct: 94 HDTNRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGRPTVVSSCNAPRIAPIWR 153
Query: 342 PITPLSLTEPT 374
PI L PT
Sbjct: 154 PIDKSPLGNPT 164
>04_04_1375 +
33040329-33040854,33041611-33041838,33041984-33042081,
33042406-33042450,33042678-33042846,33042917-33043026,
33043983-33044051,33044085-33044158,33044738-33044804,
33044876-33044988,33045148-33045237,33046030-33046144,
33046230-33046388
Length = 620
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +3
Query: 219 PSVADRAPSTLVLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSL 362
P A ST+VL T R PP A SAS + R P SL
Sbjct: 55 PKRRQLAASTIVLDDTPTPPKRRPPPVAADRSASVVADTPRSFVPCSL 102
>01_05_0066 + 17794394-17794877,17795015-17795031
Length = 166
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 251 GAGVSTNDDLSCQTSDGQEGEC 316
G G +T DD+ T+ GQ+G C
Sbjct: 106 GGGGTTTDDIEAATTKGQDGNC 127
>02_04_0357 - 22339691-22339773,22340087-22340371,22340407-22340524
Length = 161
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 310 PFLAVGGLARKVIVRRDASTRVDGALSATLGCVTGCNCV 194
P + G +A +++ R +S G+L A + VTGC+C+
Sbjct: 47 PCITFGQIA-EIVDRGSSSCGTSGSLYALVFLVTGCSCI 84
>02_01_0289 - 1937125-1937385,1937570-1937611
Length = 100
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -1
Query: 572 PNLVSPSTSPVVRKATPSGFRRRSPGSLAGSPAWA*WDLLAVSGREPD 429
P+ SP + G RRR G + GS AW + + SGR+ D
Sbjct: 46 PDSCSPHRPQLGVGCRQIGVRRRRTGGMNGSGAWEEETVASESGRDED 93
>01_03_0311 +
14905995-14906393,14906982-14907009,14907893-14907930,
14908741-14908878,14909180-14909356,14909497-14909550,
14909713-14909813,14910445-14910739
Length = 409
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +3
Query: 240 PSTLVLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEPTSSI*ESAVARVHRT 416
P+ V+ + R RP A + T +RP+ ++ T P ++ VA RT
Sbjct: 7 PAAAVMRTWLATAARLRPAVATTWTRPVTTARLRPLAAVTRTRPVTAARSRPVAATTRT 65
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 452 PTDPITPRPETLPMNQGCGGGTLTALPS 535
PT+P T RP LP + T +A PS
Sbjct: 44 PTNPTTGRPRPLPSDTTAAASTCSASPS 71
>06_01_1197 - 10298410-10298670,10298860-10298901
Length = 100
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 518 GFRRRSPGSLAGSPAWA*WDLLAVSGREPD 429
G RRR G + GS AW + + SGR+ D
Sbjct: 64 GVRRRRTGGMNGSGAWEEETVASESGRDED 93
>05_03_0107 - 8470386-8470559,8470694-8471737
Length = 405
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +1
Query: 412 VHRRLLSGSRPETANRSHHAQAGDPANEPGLRRRNPDGVAFRTTG---DVDGETKFGEFP 582
V ++L+ G+ A R H A + PG ++ PD AF T D+ T G
Sbjct: 123 VEKKLIGGAAILGAGRPPHVAADEATPPPGAKKPKPDHRAFFWTALGHDMASTTSAGS-D 181
Query: 583 WMVAILKVEPVDDN 624
+ + VDDN
Sbjct: 182 TGATLDNIAVVDDN 195
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 75 ISKDVQASTHRLSRVGVRAEHGHRGSGVDH*SDLHISEPP 194
+ K+ +S+ RL + HGH G G H H+S P
Sbjct: 3 LHKEASSSSSRLDAAPLLPHHGHGGGGAGH----HLSSQP 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,817,508
Number of Sequences: 37544
Number of extensions: 470304
Number of successful extensions: 1798
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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