Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30477
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               31   0.91 
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               31   1.2  
SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_17357| Best HMM Match : IMS (HMM E-Value=0)                         30   2.1  
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)                   29   2.8  
SB_45828| Best HMM Match : S-antigen (HMM E-Value=0.0095)              29   3.7  
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)           29   4.9  
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            29   4.9  
SB_38466| Best HMM Match : DUF59 (HMM E-Value=8.2)                     28   6.4  
SB_29271| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.4  
SB_1008| Best HMM Match : DUF59 (HMM E-Value=8.2)                      28   6.4  

>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 189 PPTQLQPVTQPSVADRAPSTLVLASLRTMTFRARPPTAKKGSASTITCA 335
           PPT+ +P T       AP +  + +    T +A  PT  K +AST T A
Sbjct: 378 PPTKAKPPTTTPSKATAPISDPMTTTTPTTTKATTPTTTKATASTQTAA 426


>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +2

Query: 365 GTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLP-MNQGC 505
           G N   +     P   Y+ V    P  +PP  P TP+P   P +  GC
Sbjct: 195 GMNPSQLAQSVVPAPQYVHVPPATPTPKPPPTPKTPKPGAAPKIKNGC 242


>SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 139 DTGDLESIINQI---FTSANPRRNCSRSRSLVSLTGLHRPWCWRLYER*PFVPDLRRPRR 309
           D G+++ + ++    F   NP+ N S+   + + T +  P+ W+L++  PF+P + +   
Sbjct: 321 DVGEMKDVSSKFLVRFDHQNPQTNHSKILEIKNTTNVSLPFRWKLFK--PFLPSVSQEPT 378

Query: 310 G 312
           G
Sbjct: 379 G 379


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +3

Query: 183  SEPPTQLQPVTQPSV--ADRAPSTLVLASLRTMTFRA-RPPTAKKGSASTITCAMRPITP 353
            ++P T  +  T P+   ++  P T+   +  T T  A +PPT +K + +T T       P
Sbjct: 1426 TKPTTTTRKTTIPTTTASETKPPTIRKTTTATTTVPATKPPTTRKTTTATTTQGRTTRKP 1485

Query: 354  LSLTEPTSSI 383
             +  EP +++
Sbjct: 1486 TTTAEPPTTV 1495


>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
          Length = 990

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +2

Query: 311 ECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDV--CCLAPDQRPPTDPITPRPET 484
           +C++  LCN+    I  D +N         P S  +D   C   PD  PP    TP P  
Sbjct: 694 QCIDNSLCNS----IAGDVSNRQSRDEEKAPLSPDVDKMQCFSPPDSLPPLPKFTPSPTG 749

Query: 485 LPMNQGCGGG 514
            P   G   G
Sbjct: 750 YPCRTGVNQG 759


>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
          Length = 515

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 27/95 (28%), Positives = 40/95 (42%)
 Frame = +2

Query: 263 STNDDLSCQTSDGQEGECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCLAPD 442
           ST+   SC  +DG +G   +Y +  +  NT   DG      +V    C  + DV  L   
Sbjct: 220 STSSTNSCPNTDGVKGG--SYQVRESCPNT---DGVQGGSYQVNE--CIRFNDVIFLCKS 272

Query: 443 QRPPTDPITPRPETLPMNQGCGGGTLTALPSGPRA 547
           Q PP+    P      +NQ     + T  P+ P+A
Sbjct: 273 QGPPSPSAGPTKPPRSVNQSADATSST--PTMPQA 305


>SB_45828| Best HMM Match : S-antigen (HMM E-Value=0.0095)
          Length = 250

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
 Frame = +3

Query: 183 SEPPTQLQPVTQPSVADRAPSTLVLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSL 362
           S+ PT       P+ A + P T   AS    T  ++ PT           +  P T  S 
Sbjct: 19  SKVPTTDASKVPPTDASKVPPTDANASKVPTTDASKVPTTDASKVPPTDASKVPPTDASK 78

Query: 363 TEPT--SSI*ESAVARVHRTSTSAVWLPTRDRQQIP 464
             PT  S +  +  ++V  T  S V  PT D  ++P
Sbjct: 79  VPPTDASKVPPTDASKVPTTDASKV--PTTDVSKVP 112


>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
          Length = 1118

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
 Frame = +3

Query: 129 AEHGHRGSGVDH-*SDLHISEPPTQLQPVTQPSVADRAPSTLVLASLRTMTFRARPPTAK 305
           A HGH G+ V H  ++ H S      Q  T  S   R P+   + S R +    RPP   
Sbjct: 64  APHGHTGAHVSHGRTNNHTSHGHMNTQTETSTS---RQPTAAPIRSARLVI--DRPPITA 118

Query: 306 KGSASTITCAMRPITPLSLTEPTSSI*ESAVARVHRTSTSAVWLPTRDRQQIP 464
             +  ++  + +P     L    SS  +S      +TS+ A+  P+      P
Sbjct: 119 NNTPDSMDNSNQPSVHPKLPISESSKEKSTPPNTPQTSSKALEKPSSTSSSKP 171


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = +2

Query: 356 ITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCG 508
           +T G   I  R G G   +++D+C      R   D      E +    GCG
Sbjct: 60  VTFGHGWISARQGEGHVQTWMDICKTGRRSRSDMDGYLQEREKVTFRHGCG 110


>SB_38466| Best HMM Match : DUF59 (HMM E-Value=8.2)
          Length = 360

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 306 SWPSEVWHERSSFVETPAPGSMEP 235
           +WP EVW E    +E   P  ++P
Sbjct: 173 AWPEEVWREFDPLLEQKGPEGLDP 196


>SB_29271| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 796

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 251 GAGVSTNDDLSCQTSDGQEG-ECVNYYLCNAANNTIITDGTN 373
           G+ VS  +  SCQ  DG++  +CV  Y C A  +  ++ G +
Sbjct: 744 GSAVSAKELGSCQQGDGEDKFKCVLDYTCTAFYHNEVSGGAH 785


>SB_1008| Best HMM Match : DUF59 (HMM E-Value=8.2)
          Length = 145

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 306 SWPSEVWHERSSFVETPAPGSMEP 235
           +WP EVW E    +E   P  ++P
Sbjct: 120 AWPEEVWREFDPLLEQKGPEGLDP 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,620,624
Number of Sequences: 59808
Number of extensions: 468364
Number of successful extensions: 1579
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)