Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30477
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.70 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.70 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   2.8  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   2.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 ARPPTAKKGSASTITCAMRPITPLSLT 365
           +R  T KKG  +T+ C +   TP+++T
Sbjct: 814 SRLVTVKKGDTATLHCEVHGDTPVTVT 840


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 ARPPTAKKGSASTITCAMRPITPLSLT 365
           +R  T KKG  +T+ C +   TP+++T
Sbjct: 810 SRLVTVKKGDTATLHCEVHGDTPVTVT 836


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
 Frame = +2

Query: 317 VNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYID------VCCLAPDQRPPTDPITPRP 478
           +N++  +    + +   +N+  + V  G C  +I       VC     ++ P   +  RP
Sbjct: 341 LNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHNVVYRP 400

Query: 479 ETLPMNQGCGGGTLTALPSGP 541
              P+ Q   GG  T   +GP
Sbjct: 401 GENPVTQKREGGPPTGATTGP 421


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
 Frame = +2

Query: 317 VNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYID------VCCLAPDQRPPTDPITPRP 478
           +N++  +    + +   +N+  + V  G C  +I       VC     ++ P   +  RP
Sbjct: 361 LNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHNVVYRP 420

Query: 479 ETLPMNQGCGGGTLTALPSGP 541
              P+ Q   GG  T   +GP
Sbjct: 421 GENPVTQKREGGPPTGATTGP 441


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
 Frame = +2

Query: 317 VNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYID------VCCLAPDQRPPTDPITPRP 478
           +N++  +    + +   +N+  + V  G C  +I       VC     ++ P   +  RP
Sbjct: 310 LNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMHNVVYRP 369

Query: 479 ETLPMNQGCGGGTLTALPSGP 541
              P+ Q   GG  T   +GP
Sbjct: 370 GENPVTQKREGGPPTGATTGP 390


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 440 REPDSRRRCTMNTGHC 393
           R+PD   +C    GHC
Sbjct: 28  RQPDGMNQCQAVNGHC 43


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 440 REPDSRRRCTMNTGHC 393
           R+PD   +C    GHC
Sbjct: 28  RQPDGMNQCQAVNGHC 43


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 439 RPETANRSHHAQAGDPAN 492
           R ET+N   +  AG P+N
Sbjct: 4   RQETSNEDSYLSAGRPSN 21


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +3

Query: 294 PTAKKGSASTIT---CAMRPITPLSLTEPTSSI*ESAVARVHRTS 419
           P A  GSAS +T       P+  +S TE T S   +++   H  +
Sbjct: 470 PAASWGSASDVTLDEAVKSPLGSVSSTESTCSGEVASLTEYHHVA 514


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,380
Number of Sequences: 438
Number of extensions: 4144
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)