Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30477
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative        31   0.56 
At3g14240.1 68416.m01803 subtilase family protein contains simil...    31   0.98 
At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-proly...    30   1.7  
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    29   2.3  
At2g40970.1 68415.m05060 myb family transcription factor contain...    29   4.0  
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi...    28   5.2  
At1g14870.1 68414.m01778 expressed protein similar to PGPS/D12 [...    28   5.2  
At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase fa...    28   6.9  
At3g54320.1 68416.m06003 ovule development protein, putative sim...    28   6.9  
At5g04520.1 68418.m00452 expressed protein ; expression supporte...    27   9.2  

>At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative
          Length = 233

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +2

Query: 332 CNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCL---APDQRPPTDPITPRPETLPMNQG 502
           C A+N  ++  G  ++  R   GPC   + V C+   AP    P   +    +  P N  
Sbjct: 131 CGASNTCMVCRGA-ILSWRYKCGPCMLDVHVECVNSSAPAATEPQMDLNTSQDPQPYNDE 189

Query: 503 CGG 511
           CGG
Sbjct: 190 CGG 192


>At3g14240.1 68416.m01803 subtilase family protein contains
           similarity to SBT1 GI:1771160 from [Lycopersicon
           esculentum]
          Length = 775

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 25/79 (31%), Positives = 35/79 (44%)
 Frame = -2

Query: 460 ICWRSLVGSQTADVDVR*TRATADSYIDDVGSVSDNGVIGRIAQVIVDALPFLAVGGLAR 281
           +CW S  G   +D+      A AD    DV S+S  GV+       +DA+   A G + R
Sbjct: 250 VCWNS--GCYDSDILAAFDTAVADGV--DVISLSVGGVV---VPYYLDAIAIGAFGAIDR 302

Query: 280 KVIVRRDASTRVDGALSAT 224
            + V   A     GAL+ T
Sbjct: 303 GIFVSASAGNGGPGALTVT 321


>At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein similar to 70 kDa
           peptidylprolyl isomerase (Peptidylprolyl cis-trans
           isomerase) (PPiase) (Rotamase) (SP:Q43207) [Triticum
           aestivum]; FKBP-type peptidyl-prolyl cis-trans
           isomerase,Synechocystis sp., PIR2:S75144; contains Pfam
           PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
          Length = 229

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 261 SLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEPTSSI 383
           SLR    R+  P++   S+ST+  A R    LS+   TSS+
Sbjct: 26  SLRIFASRSSAPSSSSSSSSTVAAASRRSISLSIIAVTSSV 66


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 25/70 (35%), Positives = 37/70 (52%)
 Frame = +3

Query: 255 LASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEPTSSI*ESAVARVHRTSTSAVW 434
           +A+LR    RA PP++    AST  C+ RP+  L    PT  I      +V R S +A +
Sbjct: 29  IANLRRFHRRAFPPSSV---ASTNLCSFRPLVSLPPLIPTFPIGRFYNHQV-RVS-AADF 83

Query: 435 LPTRDRQQIP 464
           +P+   QQ+P
Sbjct: 84  VPSYHNQQLP 93


>At2g40970.1 68415.m05060 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 248

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +2

Query: 452 PTDPITPRPETLPMNQGCGGGTLTALPSG 538
           PT P TP P  + MN   GGG  T L SG
Sbjct: 66  PTTP-TPTPPPMMMNSDFGGGDSTDLGSG 93


>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 576

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 472 GRDGICWRSLVGSQTADVDVR*TRATADSYID 377
           G DG+ WR+L+G+ +A  D++  +  A   I+
Sbjct: 488 GYDGVAWRALLGACSARKDLKAAKTVAAKMIE 519


>At1g14870.1 68414.m01778 expressed protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 152

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 310 PFLAVGGLARKVIVRRDASTRVDGALSATLGCVTGCNCV 194
           P +  G +A +++ R   S    GAL A +  VTGC C+
Sbjct: 37  PCITFGQVA-EIVDRGSTSCGTAGALYALIAVVTGCACI 74


>At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana];  contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 529

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 167 LMIDSRSPVSMFCAHADA--RKPMSRSLYIFGYYSQNITLTISNSQCSS*SNR 15
           L+++   P + + A       KP   S+Y    YS + T T S+S C S  +R
Sbjct: 122 LVVEDNEPAAKWLALISQALNKPKQESVYSNAAYSASRTTTCSSSSCGSEESR 174


>At3g54320.1 68416.m06003 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 427

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 306 KGSASTITCAMRPITPLSLTEPTSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSRP 473
           K   +T TC+  P + +S +  TSS  +S   R  R   +    P+ D+   P+ P
Sbjct: 2   KKRLTTSTCSSSPSSSVSSSTTTSSPIQSEAPRPKRAKRAKKSSPSGDKSHNPTSP 57


>At5g04520.1 68418.m00452 expressed protein ; expression supported
           by MPSS
          Length = 291

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 566 LVSPSTSPVVRKATPSGFRRRSPGSLAGSPAWA---*WDLLAVSGRE 435
           LVSPS  P + +A     R+    SLA + +WA    WD++A  G++
Sbjct: 61  LVSPSLMPKLGRAGSLQSRQAIVHSLAHTESWAIDLSWDIIARFGKQ 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,726
Number of Sequences: 28952
Number of extensions: 316913
Number of successful extensions: 1047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)