Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30475
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    29   0.56 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    28   0.97 
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   2.3  
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    27   3.0  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    25   6.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   6.9  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    25   9.1  

>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -3

Query: 344 ENTVRAPVRLPAHRSGAPAGRLRSIRVRDRLKMEFTVAVSTSAFLDTSI 198
           +NT+ A +++P           RS+ ++D+LK+++T+ V  SAF    I
Sbjct: 372 KNTIHAQIKIPEF--------CRSVNLKDQLKIDYTLEVCFSAFFKPRI 412


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 17  AIRAERDAPFSEDLPPAEDTVH 82
           A+   R+  FSE LP AED VH
Sbjct: 473 ALSCHRNLSFSESLPTAEDQVH 494


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 45  SARTFLRQRTLYMPAGAEPAHQHALQVAPVSHTSQVHDLKIRK 173
           SART    R  ++P  + P H+ A +   +S  S+  + + RK
Sbjct: 29  SARTLKICRFRFLPTPSHPTHKMAQETRAISSISEAANKRARK 71


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 55  PSSGRGHCTCLPGRSPRTSMLYKWL 129
           PSSG G  T + G  P+ + L +W+
Sbjct: 186 PSSGEGAATVVEGIDPKPAALQEWV 210


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 597 KKPKNIFIFNHTSLRRKRSIR 535
           KK  NI  FNH  +R+KRS++
Sbjct: 192 KKFVNIADFNHCYMRKKRSLK 212


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 367 PPGSPQPPKTRFGPRSGSP 311
           PP S QPP T  G  + SP
Sbjct: 36  PPSSQQPPSTPNGKEAASP 54


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 156 HEPEMYEIPEPLVEHAGARAPPRQACTVSS 67
           HE  ++++ +PL+E++G+   P    T  S
Sbjct: 89  HEYNVFDLIQPLIEYSGSAFMPMSTFTPQS 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,733
Number of Sequences: 5004
Number of extensions: 40474
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)