Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30475
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97...    30   1.3  
09_02_0081 - 4041364-4041555,4041830-4041911,4042192-4042443,404...    30   1.8  
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066...    30   1.8  
02_05_0600 - 30273080-30274692,30274709-30274949                       29   2.3  
02_05_0496 - 29499959-29500653,29501039-29501093                       29   2.3  
03_05_0267 - 22538631-22539452                                         28   5.4  
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192           28   7.1  
03_01_0053 + 457622-458191,458328-458393,458734-458978,459393-45...    28   7.1  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     28   7.1  

>09_01_0066 -
           978018-978500,978588-979034,979113-979412,979521-979855,
           980325-980703
          Length = 647

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 373 RAPPGSPQPPKTRFGPRSGSPRTGPAL 293
           R PP SP PP  R   +  SP TG AL
Sbjct: 46  RRPPPSPTPPARRRPTKPASPPTGAAL 72


>09_02_0081 -
           4041364-4041555,4041830-4041911,4042192-4042443,
           4042529-4044001,4044222-4044733,4044824-4045021
          Length = 902

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 370 APPGSPQPPKTRFGPRSGSPRTGPA 296
           APP  P+PP  R  PR  +P   P+
Sbjct: 495 APPSPPEPPSPRHPPRQPTPPPSPS 519


>06_03_0627 +
           22903346-22903523,22906010-22906152,22906235-22906618,
           22906980-22907069,22907147-22907320,22907414-22907551,
           22907719-22907856,22907958-22908019,22908240-22908513
          Length = 526

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
 Frame = +1

Query: 49  RGPSSGRG--HCTCLPGRSPRTSMLYKWLRYLIHLRFMTSKSGKLYLHTDIRI--LVSRK 216
           R  +SG G  H     G +PRT+   ++ +  I+ RF+ + SGK +   D R   +++R 
Sbjct: 18  RAENSGAGCLHGGDDGGGTPRTTPEIRYTKLFINGRFVDAASGKTFETRDPRTGDVIARV 77

Query: 217 ADVDTATVNSIFSRSRTRIDLRRPAGAPDRCAGSRTG 327
           A+ D   V+     +R   D     G   R +GS  G
Sbjct: 78  AEGDKEDVDLAVKAAREAFD----HGEWPRMSGSERG 110


>02_05_0600 - 30273080-30274692,30274709-30274949
          Length = 617

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 121 CRACWCAGSAPAGMYSVLCRRKVL 50
           CR CW + S+P G   ++CRR VL
Sbjct: 204 CRRCWASTSSPTG--RLVCRRLVL 225



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 130 GATCRACWCAGSAPAGMYSVL 68
           G  CR CW + S+P G+ S L
Sbjct: 496 GLLCRRCWASTSSPTGLPSPL 516


>02_05_0496 - 29499959-29500653,29501039-29501093
          Length = 249

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 370 APPGSPQPPKTRFGPRSGSPRTGP 299
           APP  P+PPK     +SG  R GP
Sbjct: 115 APPAEPKPPKRGKNKKSGRVRFGP 138


>03_05_0267 - 22538631-22539452
          Length = 273

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 370 APPGSPQPPKTRFGPRSGSPRTGPALR 290
           +PP SP P   R  P S SP  G + R
Sbjct: 187 SPPASPSPSPARTSPPSSSPSRGCSAR 213


>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
          Length = 283

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 459 CVVRTRPRCGSRSRA 415
           C +R RPRCG R+R+
Sbjct: 117 CAIRPRPRCGPRARS 131


>03_01_0053 +
           457622-458191,458328-458393,458734-458978,459393-459861
          Length = 449

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 358 SPQPPKTRFGPRSGSPRTGPALRLDV*DL 272
           +P PP+  F P + +PR  PALR+ V DL
Sbjct: 55  TPPPPRPAFLPSTSTPR--PALRIYVYDL 81


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 367 PPGSPQPPKTRFGPRSGSPRTGP 299
           P   P PPK + GP+   P+ GP
Sbjct: 163 PKPKPSPPKPKPGPKPKPPKPGP 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,645
Number of Sequences: 37544
Number of extensions: 335093
Number of successful extensions: 1299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)