Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30475
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27954| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.012
SB_24681| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)               28   5.5  
SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           28   7.2  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_27954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +3

Query: 3   KMFVVLYELSGMPPSARTFLRQRTLYMPAG 92
           K+FV +Y++S MPP  +TFLRQ+T  +  G
Sbjct: 479 KVFVAVYDVSDMPPLTQTFLRQKTFSVRKG 508


>SB_24681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 11/18 (61%), Positives = 17/18 (94%)
 Frame = +1

Query: 151 FMTSKSGKLYLHTDIRIL 204
           F +S+SG++YLHTDIR++
Sbjct: 2   FASSRSGRIYLHTDIRVI 19


>SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)
          Length = 908

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 52  GPSSGRGHCTCLPGRSPRTSMLYKWLRYLIHLRFMTSKSGKLY 180
           GPS+   H      R PR + L++ L +L  LR+ T  +  LY
Sbjct: 767 GPSNTPLHFPIPDPRKPRYTSLFRTLEHLTTLRYSTPSNTLLY 809


>SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 457

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 140 MRYRSHL*SMLVRGLRPGRHVQCPLPEEGP 51
           M++ +H  S+    L P  HVQCP  EE P
Sbjct: 138 MKHHAHHQSVPRHDLGPVSHVQCPCNEERP 167


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 373  RAPPGSPQPPKTRFGPRSGS 314
            RAPP  P PP +R   RSGS
Sbjct: 1762 RAPPPRPPPPSSRGHSRSGS 1781


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,098
Number of Sequences: 59808
Number of extensions: 355278
Number of successful extensions: 1119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)