Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30475
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.5  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   5.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   5.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   5.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   5.7  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   9.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   9.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   9.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   9.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 159 GHEPEMYEIPEPLV 118
           GH+P+ ++IP  LV
Sbjct: 239 GHDPDYFDIPNELV 252


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 428 EPQRGRVRTTQFHVRPRQPQILSSLT 505
           E  R R R  +   R ++P+I+SSL+
Sbjct: 61  ETSRERSRDRKERERSKEPKIISSLS 86


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 428 EPQRGRVRTTQFHVRPRQPQILSSLT 505
           E  R R R  +   R ++P+I+SSL+
Sbjct: 61  ETSRERSRDRKERERSKEPKIISSLS 86


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 428 EPQRGRVRTTQFHVRPRQPQILSSLT 505
           E  R R R  +   R ++P+I+SSL+
Sbjct: 61  ETSRERSRDRKERERSKEPKIISSLS 86


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 428 EPQRGRVRTTQFHVRPRQPQILSSLT 505
           E  R R R  +   R ++P+I+SSL+
Sbjct: 61  ETSRERSRDRKERERSKEPKIISSLS 86


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 65  ERSRDRTER--ERSREPKIISSLS 86


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 64  ERSRDRTER--ERSREPKIISSLS 85


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 428 EPQRGRVRTTQFHVRPRQPQILSSLT 505
           E  + R R      R R+P+I+SSL+
Sbjct: 60  ETSKERSRDRAERERSREPKIISSLS 85


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 65  ERSRDRTER--ERSREPKIISSLS 86


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 65  ERSRDRTER--ERSREPKIISSLS 86


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 65  ERSRDRTER--ERSREPKIISSLS 86


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 65  ERSRDRTER--ERSREPKIISSLS 86


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 65  ERSRDRTER--ERSREPKIISSLS 86


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 65  ERSRDRTER--ERSREPKIISSLS 86


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 65  ERSRDRTER--ERSREPKIISSLS 86


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 65  ERSRDRTER--ERSREPKIISSLS 86


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 298 ERSRDRTER--ERSREPKIISSLS 319


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 QRGRVRTTQFHVRPRQPQILSSLT 505
           +R R RT +   R R+P+I+SSL+
Sbjct: 298 ERSRDRTER--ERSREPKIISSLS 319


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 39  PPSARTFLRQRTLYMPAGAEPAHQ 110
           P   ++F++Q +LY+    +  HQ
Sbjct: 85  PTQLQSFMQQHSLYLQQQQQQHHQ 108


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 197 GYSCQGRRTLTRRL*IPSSADLEL 268
           GY C+    LTR++ + S A++ +
Sbjct: 206 GYRCRTMHRLTRQVVVSSVANVRI 229


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 197 GYSCQGRRTLTRRL*IPSSADLEL 268
           GY C+    LTR++ + S A++ +
Sbjct: 206 GYRCRTMHRLTRQVVVSSVANVRI 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,911
Number of Sequences: 438
Number of extensions: 3405
Number of successful extensions: 41
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)