Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30475
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20300.1 68418.m02416 chloroplast outer membrane protein, put...    31   0.84 
At3g50180.1 68416.m05486 hypothetical protein                          29   3.4  
At2g14260.2 68415.m01594 proline iminopeptidase identical to GP:...    29   3.4  
At2g14260.1 68415.m01595 proline iminopeptidase identical to GP:...    29   3.4  
At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplas...    28   4.5  
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    28   4.5  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    28   4.5  

>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 793

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 166 SGKLYLHTDIRILVSRKADVD-TATVNSIFSRSRTRIDLRRP-AGAPDRCAGSRTGARTV 339
           SG   L   +RILV  K  V  +AT+NSIF + ++  D  RP     +   G+ +G +  
Sbjct: 158 SGIPELDFSLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVT 217

Query: 340 F 342
           F
Sbjct: 218 F 218


>At3g50180.1 68416.m05486 hypothetical protein
          Length = 588

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -1

Query: 373 RAPPGSPQPPKTRFGPRSGSPRTGPALRL 287
           RAPP  P PP     P    PR GP LRL
Sbjct: 23  RAPPPQPPPPPPP-PPPPPPPRLGPRLRL 50


>At2g14260.2 68415.m01594 proline iminopeptidase identical to
           GP:1710151:U72711
          Length = 329

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 39  PPSARTFLRQRTLYMPAGAEPAHQHALQVAPVSHT---SQVHDLKIRKAVFAHGHPDTRV 209
           P  A TF+ +RTLY P   EP     L+V+ V HT    Q         VF HG P    
Sbjct: 3   PHEAETFVNKRTLYAP--IEPYSSGNLKVSDV-HTLYWEQSGKPDGHPVVFLHGGPGGGT 59

Query: 210 KEGGR*HGDCKFH 248
               R   D +F+
Sbjct: 60  APSNRRFFDPEFY 72


>At2g14260.1 68415.m01595 proline iminopeptidase identical to
           GP:1710151:U72711
          Length = 380

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 39  PPSARTFLRQRTLYMPAGAEPAHQHALQVAPVSHT---SQVHDLKIRKAVFAHGHPDTRV 209
           P  A TF+ +RTLY P   EP     L+V+ V HT    Q         VF HG P    
Sbjct: 54  PHEAETFVNKRTLYAP--IEPYSSGNLKVSDV-HTLYWEQSGKPDGHPVVFLHGGPGGGT 110

Query: 210 KEGGR*HGDCKFH 248
               R   D +F+
Sbjct: 111 APSNRRFFDPEFY 123


>At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplasmic
           / asparagine-tRNA ligase 1 (SYNC1) identical to
           SP|Q9SW96
          Length = 572

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 39  PPSARTFLRQRTLYMPAGAEPAHQHALQVAPVSHTSQVHDLKIRKAVFAHGHPDTRVKEG 218
           PP+       R + +  G   A   A + +  + T+ V +LKI K  FAH    +R++ G
Sbjct: 231 PPTEADVEAARLIVIERGNVVAELKAAKASKEAITAAVAELKIAKETFAHIDERSRLRPG 290


>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 367 PPGSPQPPKTRFGPRSGSPRTGPALRLD 284
           P G   PP    GP++  P +GPA  LD
Sbjct: 408 PKGPRPPPPMSLGPKAPRPPSGPADALD 435


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 367 PPGSPQPPKTRFGPRSGSPRTGPALRLD 284
           P G   PP    GP++  P +GPA  LD
Sbjct: 408 PKGPRPPPPMSLGPKAPRPPSGPADALD 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,346,140
Number of Sequences: 28952
Number of extensions: 235112
Number of successful extensions: 694
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)