Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30474
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   3.5  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    26   6.1  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   8.1  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 562 KRIPKNLRMAPSQHEHNRTRQNHAIIVDKQRCHNK 666
           K++PKNL +A     +NR  +  AI+ + QR   K
Sbjct: 577 KKMPKNLTLADKILFYNRANRTVAILCNHQRSVTK 611


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 539 AKHTNVTRSEFQKISEWLRVNTNTIELAKIMPLL 640
           AK  N  R E  K   W+   TNT ++  IM +L
Sbjct: 301 AKFVNSQRREHNKSVSWVVAFTNTKDVTGIMKIL 334


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 578 ISEWLRVNTNTIELAKIMPLLSISNVATTRLS*HAKTYYE 697
           I  WL V  NT+ L KI  L S +++    L+   K Y+E
Sbjct: 488 ILSWLCVE-NTVTLKKIKMLFSEASIPIDELTDALKNYHE 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,143
Number of Sequences: 5004
Number of extensions: 59818
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)