Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30474
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361...    33   0.17 
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115...    29   2.8  
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224     28   6.4  
01_01_1152 + 9170628-9171899                                           28   6.4  

>07_01_0480 +
           3616123-3617506,3618033-3618166,3618578-3618818,
           3618912-3619120,3619234-3619265,3619363-3619474,
           3619609-3619890
          Length = 797

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 285 LKFLVLAIVPLSFAQNIPKATN--LHNGLTEKIGNFSIELLYHTSNLEQSKGN 437
           ++FL   I+P  FA N+ K TN  L   L  KIG+++I +L  T   E   GN
Sbjct: 610 IQFLHGGIIPGLFANNL-KITNILLDQNLVAKIGSYNIPILSETMKSEGGSGN 661


>04_01_0112 +
           1151242-1151272,1151722-1151928,1151996-1152318,
           1152552-1153793
          Length = 600

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 228 GIYETCFKRVE*TKLIMCLLKFLVLAIVPLSFAQNIPKATNLHNGLTEKIGNFSIELLYH 407
           G   +C  +++  K +     FL+  I P +   N+ K   +H G+    G F +  L +
Sbjct: 99  GTINSCLGKLQQLKYLNMERNFLMGEIAP-NLLINLTKLETIHLGVNNLTGTFMLSWLAN 157

Query: 408 TSNL 419
           +SNL
Sbjct: 158 SSNL 161


>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
          Length = 787

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 582 EIFWNSLRVTFVCFACSRNA*LICRSYFQTRLQLSPP 472
           E+ + +  V   C  CS+ A  + +S  QTRL L PP
Sbjct: 640 ELHFEAETVELTCENCSKFAQKLNKSVIQTRLSLLPP 676


>01_01_1152 + 9170628-9171899
          Length = 423

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 435 NLIMSPITVWTVLAVIAEGASGNT 506
           N I+SP++    LA++A+GA G T
Sbjct: 60  NFIVSPLSFHAALALVADGARGET 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,911,433
Number of Sequences: 37544
Number of extensions: 348706
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)