Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30474
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)                   31   0.93 
SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_49824| Best HMM Match : DIL (HMM E-Value=2.8e-15)                   30   2.1  
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     29   2.8  
SB_47661| Best HMM Match : zf-CCHC (HMM E-Value=0.015)                 29   3.7  
SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10)                 28   8.6  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           28   8.6  

>SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)
          Length = 1268

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 437 LDYVSNHRLDGFGGDS*RRVWKYERQINHALRL-QAKHTNVTRSEFQKISE 586
           LDY+S H L   GGDS  ++ K+    +HA+ L + +   +     QK++E
Sbjct: 823 LDYLSRHPLPETGGDSTEKIIKWTVDADHAVVLKRIREETLKDKTSQKLAE 873


>SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 462 WTVLAVIAEGASGNTSGRSIMRYGYKQSIRT 554
           WTV    ++GA G TSGR  M +G+    RT
Sbjct: 876 WTVANCSSDGADGFTSGRYYMGFGHHSKPRT 906


>SB_49824| Best HMM Match : DIL (HMM E-Value=2.8e-15)
          Length = 289

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +2

Query: 488 RRVWKYERQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKIMPLLSISNVATTR 667
           +R+ K   Q+ + L        + +  F+++ +W+RV  N +E + I+  L     AT  
Sbjct: 130 KRITKKLSQVLNILNAHCVDPEIIKQCFRQLEDWVRV--NQLEGSGIVEALECITQATQL 187

Query: 668 LS*HAKTYYETDMI 709
           L  + KT  + D I
Sbjct: 188 LQVNKKTLEDVDAI 201


>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 512  QINHALRLQAKHTNVTRS-EFQKISEWLRVNTNTIEL-AKIMPL 637
            QINH  +  A+HT+VTRS + + + E LR+    +   AKI+ +
Sbjct: 1388 QINHPFQRAAQHTDVTRSHDPEVVKEVLRLQERILRFQAKIVKI 1431


>SB_47661| Best HMM Match : zf-CCHC (HMM E-Value=0.015)
          Length = 830

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 437 LDYVSNHRLDGFGGDS*RRVWKYERQINHALRL-QAKHTNVTRSEFQKISE 586
           LDY+S H L   G DS  ++ K+    +HA+ L + +   +     QK++E
Sbjct: 648 LDYLSRHPLPETGDDSTEKIIKWTVDADHAVVLKRIREETLKEKTSQKLAE 698


>SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10)
          Length = 1037

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = +1

Query: 502  IRAADQSCVTAT--SKAYERHSKRIPKNLRMAPS-QHEHNRTRQNHAIIVDKQRCH 660
            +R A+ S + A   +  Y ++S+RIP      P+  + +N  R+N+ +++  +RCH
Sbjct: 936  LRVANISRIDALRPNNNYHKNSRRIPFVTTYNPTLPNINNIIRRNYNLLLSSKRCH 991


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +3

Query: 336  PKATNLHNGLTEKIGNFSIELLYHTSNLEQSKGNLIMSPITVWTVLAVIAEGASGNTSGR 515
            P  T+  N     + + S+     T N  QS     +  +    ++A+I  GASGN +  
Sbjct: 1784 PNKTDAGNATQANVTSHSVMHPNMTGNFTQSNSTSSIR-VNRTDLIAIIKIGASGNYTIN 1842

Query: 516  SIMRYGYKQSI-RTSLEANSKKSQNGSESTR 605
            ++    YK+ +   +L   S+  ++G+   R
Sbjct: 1843 TLPHLFYKKELGEMTLVLRSRSCKDGASRMR 1873


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,453,331
Number of Sequences: 59808
Number of extensions: 419396
Number of successful extensions: 1016
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)