Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30474
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    29   4.4  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   5.8  

>Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical
           protein R11H6.4 protein.
          Length = 230

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/60 (35%), Positives = 25/60 (41%)
 Frame = +3

Query: 399 LYHTSNLEQSKGNLIMSPITVWTVLAVIAEGASGNTSGRSIMRYGYKQSIRTSLEANSKK 578
           L  TS  E    N I S  T  T +    E  SGN +GR   +  YK SI      N+ K
Sbjct: 169 LSKTSEEEPGGNNNITSRFTFKTSIDESKEEPSGNIAGRLPPKTPYKSSIAGKSPINTSK 228


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +2

Query: 500 KYERQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKIM 631
           KY RQI H L+      N+TRSE +  ++  ++    IELAKI+
Sbjct: 350 KYLRQIAHLLKTDG---NLTRSESEMNADIEKIIDFEIELAKII 390


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +2

Query: 500 KYERQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKIM 631
           KY RQI H L+      N+TRSE +  ++  ++    IELAKI+
Sbjct: 350 KYLRQIAHLLKTDG---NLTRSESEMNADIEKIIDFEIELAKII 390


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
 Frame = +3

Query: 312 PLSFAQNIPKATNLHNGLTEKIGNFSIELLYHTSNLEQSKGNLIMSPITVWTVLAVIAEG 491
           PL  +  IP A + H+ + +   + +  L+Y     E S G + M+  T  T LA  +  
Sbjct: 515 PLGTSSAIPTAPD-HSTVHDGSSSTTKGLIYPLEPDESSSGTMDMTTPTSTTDLATSSST 573

Query: 492 ASGNTSGRSIMRYG--YKQSIRTSLEANSKKSQNGS 593
           +  NT+ RS    G     S+ TS+ + S ++ + +
Sbjct: 574 SVFNTTARSSSLPGSTSTMSVTTSIASTSPETTSST 609


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,719
Number of Sequences: 27780
Number of extensions: 329718
Number of successful extensions: 847
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)