Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30473
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 155 8e-39
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 155 8e-39
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 155 8e-39
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 33 0.042
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 27 3.6
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 6.4
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 6.4
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 25 8.4
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 155 bits (375), Expect = 8e-39
Identities = 70/112 (62%), Positives = 85/112 (75%)
Frame = +2
Query: 257 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAK 436
GQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 84 GQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTG 143
Query: 437 RTRVKLPSGAKKVLPSSNRGMVGILLEVDVLTNLF*KLEGAYHKYKVKRNCW 592
+TRVKLPSGAKKV+PSS RG+VGI+ + K A+HKY+VKRNCW
Sbjct: 144 KTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCW 195
Score = 119 bits (286), Expect = 5e-28
Identities = 55/81 (67%), Positives = 68/81 (83%)
Frame = +1
Query: 7 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 186
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 187 VHFRDPYKFKTRKELFIAPEG 249
V FR+PY ++T E F+A EG
Sbjct: 60 VAFRNPYHYRTDVETFVATEG 80
Score = 70.5 bits (165), Expect = 2e-13
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = +3
Query: 594 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLM 719
P RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGL+
Sbjct: 196 PRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLI 237
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 155 bits (375), Expect = 8e-39
Identities = 70/112 (62%), Positives = 85/112 (75%)
Frame = +2
Query: 257 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAK 436
GQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 84 GQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTG 143
Query: 437 RTRVKLPSGAKKVLPSSNRGMVGILLEVDVLTNLF*KLEGAYHKYKVKRNCW 592
+TRVKLPSGAKKV+PSS RG+VGI+ + K A+HKY+VKRNCW
Sbjct: 144 KTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCW 195
Score = 119 bits (286), Expect = 5e-28
Identities = 55/81 (67%), Positives = 68/81 (83%)
Frame = +1
Query: 7 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 186
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 187 VHFRDPYKFKTRKELFIAPEG 249
V FR+PY ++T E F+A EG
Sbjct: 60 VAFRNPYHYRTDVETFVATEG 80
Score = 70.5 bits (165), Expect = 2e-13
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = +3
Query: 594 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLM 719
P RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGL+
Sbjct: 196 PRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLI 237
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 155 bits (375), Expect = 8e-39
Identities = 70/112 (62%), Positives = 85/112 (75%)
Frame = +2
Query: 257 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAK 436
GQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 84 GQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTG 143
Query: 437 RTRVKLPSGAKKVLPSSNRGMVGILLEVDVLTNLF*KLEGAYHKYKVKRNCW 592
+TRVKLPSGAKKV+PSS RG+VGI+ + K A+HKY+VKRNCW
Sbjct: 144 KTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCW 195
Score = 119 bits (286), Expect = 5e-28
Identities = 55/81 (67%), Positives = 68/81 (83%)
Frame = +1
Query: 7 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 186
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 187 VHFRDPYKFKTRKELFIAPEG 249
V FR+PY ++T E F+A EG
Sbjct: 60 VAFRNPYHYRTDVETFVATEG 80
Score = 70.5 bits (165), Expect = 2e-13
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = +3
Query: 594 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLM 719
P RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGL+
Sbjct: 196 PRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLI 237
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 594 PYVRGVAMNPVEHPHGGGNHQHIG 665
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 33.1 bits (72), Expect = 0.042
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -2
Query: 597 MAQQLRLTLYLWYAPSSFQNRFVNTST-SSKIPTMPLLLDGRTFLAPDGSFTLVRLASGL 421
+AQQ+ L A S RF+N +T SS PLLLD + S +V +ASG+
Sbjct: 100 LAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGV 159
Query: 420 CPITVAKF 397
P+ KF
Sbjct: 160 LPLDKLKF 167
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 555 GHTTSTRSNVTAGPYVRGVAMNPVEHPHGGGNHQHIGKASTVK 683
G +T+ +T PY R V + E PH G + + A T++
Sbjct: 42 GKNGTTKLLLTVIPYFREVVLMSFECPHCGFKNAQVQHAETIQ 84
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 375 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 277
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 554 LPAFKIGLSIRPPPAKYRPCL--CCLMAEPS 468
LP F + +S P P KY+PCL C P+
Sbjct: 241 LPPF-MSMSTIPIPCKYKPCLNPACRFIHPT 270
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 8.4
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -2
Query: 549 SFQNRFVNTSTSSKIPTMPLLLDGRTFLAPDGSFTLV----RLASGLCPITVAKFPEARA 382
SF+ + NT+T + + + LDGR +P G V L + L + + P
Sbjct: 37 SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96
Query: 381 RRPLSPIFS 355
R+ PI S
Sbjct: 97 RQHNLPITS 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,379
Number of Sequences: 5004
Number of extensions: 73929
Number of successful extensions: 219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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