Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30473
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 146 1e-35
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074... 30 2.2
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.9
07_03_0556 + 19438394-19438537,19438638-19438747,19442018-194422... 29 3.8
02_05_0271 + 27342468-27343577 29 5.0
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 5.0
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 5.0
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 28 6.6
06_03_1189 + 28271185-28271394,28272421-28273326 28 6.6
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 28 6.6
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 28 8.8
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 146 bits (355), Expect = 1e-35
Identities = 64/112 (57%), Positives = 83/112 (74%)
Frame = +2
Query: 257 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAK 436
GQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI HNPD
Sbjct: 85 GQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNG 144
Query: 437 RTRVKLPSGAKKVLPSSNRGMVGILLEVDVLTNLF*KLEGAYHKYKVKRNCW 592
+R+KLPSGAKK++PSS R M+G + K AYHKY+VKRNCW
Sbjct: 145 TSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCW 196
Score = 128 bits (310), Expect = 3e-30
Identities = 59/81 (72%), Positives = 68/81 (83%)
Frame = +1
Query: 7 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 186
MGRVIRAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 187 VHFRDPYKFKTRKELFIAPEG 249
V FR P+++K +KELF+A EG
Sbjct: 61 VTFRHPFRYKHQKELFVAAEG 81
Score = 76.6 bits (180), Expect = 2e-14
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = +3
Query: 594 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLM 719
P VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KVGL+
Sbjct: 197 PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
>10_07_0053 -
12406958-12407011,12407012-12407168,12407280-12407410,
12407592-12407727,12407953-12408224,12408604-12408893,
12408984-12409285,12409359-12409424,12409506-12409571,
12409855-12409926,12410013-12410084,12410207-12410281,
12410367-12410438,12410531-12410663,12411556-12411655
Length = 665
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +3
Query: 531 QTYFESWKGHTTSTRSNVTAGPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 710
QT SW TA P R +P H +G G+ G S ++ G AG V
Sbjct: 219 QTDGNSWSTGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSSSSGGNSGLRAGAIAGIIV 278
Query: 711 GLMLL 725
L+++
Sbjct: 279 ALLVI 283
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 2.9
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 391 LWKLRHCDWT 420
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>07_03_0556 +
19438394-19438537,19438638-19438747,19442018-19442288,
19442398-19442504,19442625-19443017,19443326-19443700,
19443799-19443877,19444745-19444957
Length = 563
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -2
Query: 264 NWPGRAFGSNEELLPCLELVWIAEVYNSQRCTSTRVMDYILNNSLDV 124
+W G F + +PC +++ + N+ R R+ + L+ SL++
Sbjct: 199 SWDGYTFNVQQGKIPCFSKIFVLKTKNAGRTYRFRISNVGLSTSLNI 245
>02_05_0271 + 27342468-27343577
Length = 369
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 555 GHTTSTRSNVTAGPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 698
G T V G ++RG++M EH GGG+ H + +K +S+
Sbjct: 315 GDVTRDFLGVGGGGFMRGMSMARGEHHGGGGSDMHGTLEAEMKSASSS 362
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -3
Query: 422 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 333
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 606 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 713
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +2
Query: 443 RVKLPSGAKKVLPSSNRGMVGILLEVDVLTNLF*KLEGAYHKYKVKRNCWAI-CTWCCHE 619
R +PS K++LPS + M IL +D + +GA + K + C I CT
Sbjct: 240 RSYMPSRVKQILPSFCKDMFRILESLDFNSQY---EDGATTRLKTAKRCLIILCTLVTRH 296
Query: 620 PCRASSRWW*PSTYR*GFHCQERN 691
A + G +CQ+RN
Sbjct: 297 RKHADEILTLQFSQPDGTYCQQRN 320
>06_03_1189 + 28271185-28271394,28272421-28273326
Length = 371
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -2
Query: 384 ARRPLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPGRAFGSNEELLPCLELV 205
A P +P+ S LHT + P + FP+ F WP A + EE P + +V
Sbjct: 22 AASPRAPLPSLSLHTFFLLAMPPPSLPFPSLAYQFVL--VLWPNLANPNIEEEAPAISVV 79
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 168 RCTFGCCTLPRSIQVQDKEGALHCSRRLYQANLFIVE 278
RCT G CTL S V EG L+C + + + LF+V+
Sbjct: 138 RCTHGGCTLSPSNNV-THEGKLYC--KTHHSQLFMVK 171
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 507 FCWRWTY*QTYFESW 551
F W WTY T+F SW
Sbjct: 68 FFWSWTYWSTFFLSW 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,944,722
Number of Sequences: 37544
Number of extensions: 545102
Number of successful extensions: 1654
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -