Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30473
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             164   8e-41
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       135   3e-32
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    40   0.002
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.9  
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   28   6.8  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             28   9.0  
SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30)                    28   9.0  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  164 bits (398), Expect = 8e-41
 Identities = 74/112 (66%), Positives = 87/112 (77%)
 Frame = +2

Query: 257 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAK 436
           GQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + K
Sbjct: 85  GQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKK 144

Query: 437 RTRVKLPSGAKKVLPSSNRGMVGILLEVDVLTNLF*KLEGAYHKYKVKRNCW 592
           RTRVKLPSG KKV+PSSNR +VGI+     +     K   AYHKYK KRNCW
Sbjct: 145 RTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCW 196



 Score =  143 bits (347), Expect = 1e-34
 Identities = 66/81 (81%), Positives = 71/81 (87%)
 Frame = +1

Query: 7   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 186
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 187 VHFRDPYKFKTRKELFIAPEG 249
           V FRDPY++K RKELF+A EG
Sbjct: 61  VVFRDPYRYKLRKELFVATEG 81



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 35/42 (83%), Positives = 37/42 (88%)
 Frame = +3

Query: 594 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLM 719
           P VRGVAMNPVEHPHGGGNHQHIG  STV+R T AGRKVGL+
Sbjct: 197 PRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDTPAGRKVGLI 238


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  135 bits (327), Expect = 3e-32
 Identities = 59/81 (72%), Positives = 70/81 (86%)
 Frame = +2

Query: 257 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAK 436
           GQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + K
Sbjct: 43  GQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKK 102

Query: 437 RTRVKLPSGAKKVLPSSNRGM 499
           RTRVKLPSG KKV+PSSNR +
Sbjct: 103 RTRVKLPSGIKKVIPSSNRAL 123



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/39 (82%), Positives = 36/39 (92%)
 Frame = +1

Query: 133 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 249
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEG 39


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/80 (32%), Positives = 42/80 (52%)
 Frame = +2

Query: 284 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 463
           A L+ G+  P+  +P GT+V N+E   G   +LARA+G  A +I    +     V+LPS 
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167

Query: 464 AKKVLPSSNRGMVGILLEVD 523
            +K + S     VG +  ++
Sbjct: 168 VEKEVSSKCLASVGRVSNIE 187


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
 Frame = -2

Query: 360  FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNW-----PGRAFGSNE--ELLPCLELVW 202
            F+S L T +P+   P G+TF T +V F    +NW      GR     E   +L  LE +W
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121

Query: 201  IAEVYNSQRCTS--TRVMD 151
            I   + +    S  TR+MD
Sbjct: 1122 IRGRWTNLTDPSLKTRLMD 1140


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 380  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 508
            +AR +G+F   T +    D  RTR   P   KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513


>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
 Frame = +2

Query: 305 VMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVI--GHNPDAKRTRVKLPSGAKKVL 478
           ++ VG    G  V  ++ ++     L  AS N  T+I   H P       K  +G  +  
Sbjct: 530 MLAVGHEVTGLRVKQIDGRLAQHVHLMAASHNTLTMIFSDHGPKTTPYSHKTKAGLYEHR 589

Query: 479 PSSNRGMVGILLEVDVL-TNLF*KLEGAYHKYKVKRNCW 592
            +S    V + L V      L   L+GA H     RNCW
Sbjct: 590 RTSALASVAVTLRVTTTPAALNAPLQGASHSPFRLRNCW 628


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 555 PSSFQNRFVNTSTSSKIPT--MPLLLDGRTFLAPDGSFT 445
           PSS QN F +   +    T  + L+LD  TFL PDGS T
Sbjct: 122 PSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 602  YIWPSSYV*PCTCGMPLPAFKIGLSIRPPPAK-YRPCLCCLMAEPSWLQTVALLLY 438
            Y+ P +   PC+C +P   F +    R PP + Y  CL C     S L    LL+Y
Sbjct: 1268 YLVPQNTRPPCSC-LPY-LFTLYPRTRVPPVRVYPSCLPCTQEHASPLFVFTLLVY 1321


>SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30)
          Length = 474

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -3

Query: 350 DCTQWYPQA*LQQASHFQLQELLSFHNKQIGLVEPSGAMKSSFLVLNL----YGSRKCTT 183
           D T+W      +  +   +Q+   FH + +   E  G+M+S+ ++  +    +G  KCT 
Sbjct: 258 DTTKW-----TRNGTEASVQQSQRFHTRDLYSYE--GSMESTLIIKGVRIQDFGCYKCTV 310

Query: 182 AKGAPLPGSWIISL 141
           A    L  SW+  L
Sbjct: 311 ATSNGLGSSWVCLL 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,732,250
Number of Sequences: 59808
Number of extensions: 602539
Number of successful extensions: 1550
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)