Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30473
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   151   4e-37
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             144   4e-35
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   144   7e-35
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    47   1e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    47   1e-05
At4g14250.1 68417.m02198 UBX domain-containing protein low simil...    34   0.11 
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    27   9.7  
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun...    27   9.7  

>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  151 bits (367), Expect = 4e-37
 Identities = 66/114 (57%), Positives = 86/114 (75%)
 Frame = +2

Query: 257 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAK 436
           GQ++YCGKKA L VGNV+P+G++PEG ++CN+E  +GDRG LARASG++A VI HNP++ 
Sbjct: 86  GQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESN 145

Query: 437 RTRVKLPSGAKKVLPSSNRGMVGILLEVDVLTNLF*KLEGAYHKYKVKRNCWAI 598
            TRVKLPSG+KK+LPS+ R M+G +         F K   AYHKYK KRNCW +
Sbjct: 146 TTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPV 199



 Score =  122 bits (293), Expect = 3e-28
 Identities = 58/82 (70%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
 Frame = +1

Query: 7   MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 183
           MGRVIRAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 184 VVHFRDPYKFKTRKELFIAPEG 249
            V FR P+++  +KELF+A EG
Sbjct: 61  RVAFRHPFRYMKQKELFVAAEG 82



 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = +3

Query: 594 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 713
           P VRGVAMNPVEHPHGGGNHQHIG ASTV+R  SAG KVG
Sbjct: 198 PVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVG 237


>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  144 bits (350), Expect = 4e-35
 Identities = 65/112 (58%), Positives = 83/112 (74%)
 Frame = +2

Query: 257 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAK 436
           GQF+YCGKKATL VGNV+P+ ++PEG +VCN+E  +GDRG LARASG++A VI HNPD+ 
Sbjct: 85  GQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSD 144

Query: 437 RTRVKLPSGAKKVLPSSNRGMVGILLEVDVLTNLF*KLEGAYHKYKVKRNCW 592
            TR+KLPSG+KK++PS  R M+G +           K   AYHKY+VKRN W
Sbjct: 145 TTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSW 196



 Score =  129 bits (312), Expect = 2e-30
 Identities = 60/81 (74%), Positives = 68/81 (83%)
 Frame = +1

Query: 7   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 186
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 187 VHFRDPYKFKTRKELFIAPEG 249
           V FR P++FK +KELF+A EG
Sbjct: 61  VTFRHPFRFKKQKELFVAAEG 81



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = +3

Query: 594 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLM 719
           P VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGL+
Sbjct: 197 PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238


>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  144 bits (348), Expect = 7e-35
 Identities = 63/112 (56%), Positives = 82/112 (73%)
 Frame = +2

Query: 257 GQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAK 436
           GQF+YCGKKATL VGNV+P+ ++PEG ++CN+E  +GDRG  ARASG++A VI HNPD  
Sbjct: 85  GQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDND 144

Query: 437 RTRVKLPSGAKKVLPSSNRGMVGILLEVDVLTNLF*KLEGAYHKYKVKRNCW 592
            +R+KLPSG+KK++PS  R M+G +           K   AYHKY+VKRNCW
Sbjct: 145 TSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCW 196



 Score =  129 bits (312), Expect = 2e-30
 Identities = 60/81 (74%), Positives = 68/81 (83%)
 Frame = +1

Query: 7   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 186
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 187 VHFRDPYKFKTRKELFIAPEG 249
           V FR P++FK +KELF+A EG
Sbjct: 61  VAFRHPFRFKKQKELFVAAEG 81



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = +3

Query: 594 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLM 719
           P VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGL+
Sbjct: 197 PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLI 238


>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/70 (34%), Positives = 39/70 (55%)
 Frame = +2

Query: 296 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 475
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 476 LPSSNRGMVG 505
           + +  R  +G
Sbjct: 118 INAKCRATIG 127



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +3

Query: 594 PYVRGVAMNPVEHPHGGG 647
           P VRGVAMNP +HPHGGG
Sbjct: 152 PKVRGVAMNPCDHPHGGG 169


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/70 (34%), Positives = 39/70 (55%)
 Frame = +2

Query: 296 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 475
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 476 LPSSNRGMVG 505
           + +  R  +G
Sbjct: 118 INAKCRATIG 127



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +3

Query: 594 PYVRGVAMNPVEHPHGGG 647
           P VRGVAMNP +HPHGGG
Sbjct: 152 PKVRGVAMNPCDHPHGGG 169


>At4g14250.1 68417.m02198 UBX domain-containing protein low
           similarity to 60S ribosomal protein L2 [Nicotiana
           tabacum] GI:9230281; contains Pfam profile PF00789: UBX
           domain
          Length = 724

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/16 (93%), Positives = 15/16 (93%), Gaps = 1/16 (6%)
 Frame = +3

Query: 600 VRGVAM-NPVEHPHGG 644
           VRGVAM NPVEHPHGG
Sbjct: 422 VRGVAMMNPVEHPHGG 437


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 406 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 293
           G+V  GTC           +A +G +R   N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154


>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
           family protein low similarity to RNA polymerase IIA
           largest subunit [Trypanosoma brucei] GI:162215; contains
           InterPro accession IPR000722: RNA polymerase, alpha
           subunit
          Length = 1453

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 729 LRAA*DQLCDQQMFLS*QWKPYLYVDGYHHREDAL 625
           LR A +Q+C++Q  +   W+ +L V+G    ED++
Sbjct: 647 LREA-EQVCNKQQLMVESWRDFLAVNGEDKEEDSV 680


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,777,424
Number of Sequences: 28952
Number of extensions: 411449
Number of successful extensions: 1125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)