Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30472
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_28262| Best HMM Match : Sarcoglycan_1 (HMM E-Value=0.95)            28   8.3  

>SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 27/102 (26%), Positives = 47/102 (46%)
 Frame = +3

Query: 258  HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 437
            H+LVE     +++  ++  +D    LVA        Q  VF+ + N V K   G  K   
Sbjct: 734  HKLVEKRLVSNQQQRSIRFRDQRPHLVA--------QGVVFEPDANDVSK---GTLKVTG 782

Query: 438  FFTGESMDCDGMVAMMEYRDFDGTKYQS*CFSNMV*KKRNSK 563
            F  G+++  + +V +  Y DF  ++  S   S  + KK ++K
Sbjct: 783  FVRGQTLSANRLVHLAGYGDFQISQIDSVADSFSI-KKSSTK 823


>SB_28262| Best HMM Match : Sarcoglycan_1 (HMM E-Value=0.95)
          Length = 255

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 576 NNSIIPNWALDTFVFLSIYQSCPHPGRNWLLS 671
           +NSI  N  +  FVF ++++SC    R+W  S
Sbjct: 169 SNSIPSNTIIINFVFAALHRSCLRQKRSWNFS 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,627,967
Number of Sequences: 59808
Number of extensions: 394419
Number of successful extensions: 826
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)