Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30472
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    62   3e-10
At3g05540.1 68416.m00607 translationally controlled tumor family...    52   3e-07
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    34   0.078
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    31   0.73 
At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein...    29   3.9  
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    28   6.8  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    27   9.0  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
 Frame = +1

Query: 46  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 216
           M +Y+D++TGDE+ SD++  K ++  +++EV G+ VT    D+ I G NPSAEE   DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59

Query: 217 TDSAVESGVDIVLT 258
            D + +  VDIV T
Sbjct: 60  VDDSTQKVVDIVDT 73



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 27/70 (38%), Positives = 37/70 (52%)
 Frame = +3

Query: 288 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD 467
           DKK +  Y+K Y+K L  KL E+  DQ  VFK  +    K +L R  + QFF GE M  D
Sbjct: 83  DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDD 139

Query: 468 GMVAMMEYRD 497
             +    Y++
Sbjct: 140 STLVFAYYKE 149


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
 Frame = +3

Query: 261 RLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQF 440
           RL E  +F DKK + +++K Y+K+L  KL+    +  E+FK ++    K ++ + K+ QF
Sbjct: 62  RLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIESATKFLMSKLKDFQF 117

Query: 441 FTGESMDC-DGMVAMMEYRD 497
           F GESM+  +G +    YR+
Sbjct: 118 FVGESMEGEEGSLVFAYYRE 137



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +1

Query: 46  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGT 219
           M +Y+DI+TGDE+ SD++  K ++       G L        ++EG NPS EE   DEG 
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIE------NGML-------WEVEGKNPSGEEGGEDEGV 47

Query: 220 DSAVESGVDIVLT 258
           D      VDI+ T
Sbjct: 48  DDQAVKVVDIIDT 60


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 73  GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 240
           G+   S   K +++D V+  +T  G  +T  +G+   EGF P+AEEAD+G  S +  G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 318 DYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 461
           D M+  + KL    P  +EVFK+N N + ++    F ++  FF GE  D
Sbjct: 226 DKMEVKLLKLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein /
           molybdenum cofactor biosynthesis enzyme CNX1 (CNX1)
           identical to SP|Q39054 Molybdopterin biosynthesis CNX1
           protein (Molybdenum cofactor biosynthesis enzyme CNX1)
           {Arabidopsis thaliana}
          Length = 670

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 199 EEADEGTDSAVESGVDIVLTTG 264
           +E ++  D AV SGVDI+LT+G
Sbjct: 245 KELEKVLDEAVSSGVDIILTSG 266


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -2

Query: 156 SRHQPTGHFVNNFIDQFHFVGVREHLITSDNVLIDLHFDGLEAIKNNKNRKN 1
           SRHQP+   V    D        E   T+ + + +LHFDG     N  N  N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTN 175


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 390 MNKVMKDILGRFKELQFFTGE---SMDCDGM 473
           +NK++KDI+ R+K LQ +  +     DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,283
Number of Sequences: 28952
Number of extensions: 292269
Number of successful extensions: 753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)