Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30469
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    64   1e-11
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    30   0.35 
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    29   0.46 
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    29   0.81 
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   5.7  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   5.7  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.9  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   9.9  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 32/59 (54%), Positives = 41/59 (69%)
 Frame = +1

Query: 334 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGT 510
           ++R +L  GTVCILLAGR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI T
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIAT 104


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 484 IPQRYVIGTPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP 633
           +P  Y+IG PP+FH  T+   +  + I    +R   N     ++ +TS P
Sbjct: 99  VPSAYLIGIPPDFHGCTTPGMDMELEI----LRKYPNAALFIEKPITSAP 144


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 416 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEAQIFS 282
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  ++ FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 487 PQRYVIGTPPEFHSATSNCQNTSMMITSR 573
           P  Y+IG PPE H +T    +  + I  R
Sbjct: 121 PDAYIIGIPPETHGSTQKGADLELAILKR 149


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 460 FNSCPLRRIPQRYVIGTPPEFHSATSNCQNTSMMITSRRIRSA 588
           F +C +       + GTPPE      +CQ  SM +  R   S+
Sbjct: 325 FWTCYIFETTTSLIFGTPPELGDLEIDCQLPSMDVLPRFTESS 367


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 493 RYVIGTPPEFHSATSNCQNTSMMI 564
           R V+G  P+FH   S C+   ++I
Sbjct: 272 RLVMGHTPQFHGIVSRCEGRILLI 295


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 283 PEWGRRTSYVEGYCSGSP 230
           P W RR +   G+ SGSP
Sbjct: 658 PSWSRRLAAAIGFSSGSP 675


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 514  PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 669
            P F  +TSN  +TS  I S   R+      ++   +TS   K   T  +S+A
Sbjct: 888  PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTA 939


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 517 EFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 642
           + HS+ S+ +NT+ +++S   +S+ +V+     V T     K
Sbjct: 735 DLHSSLSDAKNTNAILSSELTKSSEDVKRLTANVETLTQDSK 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,266
Number of Sequences: 5004
Number of extensions: 51740
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)