Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30469
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               33   0.16 
SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   29   3.4  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 28   6.0  
SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)                   28   7.9  
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   28   7.9  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = +1

Query: 451 PFAFNSCPLRRIPQRYVIGT 510
           PF  N  PLRRIPQ YVI T
Sbjct: 2   PFKINGVPLRRIPQSYVIAT 21


>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 203 VKQIGGEKNGGTRTVPLNVGSPSTPLRRKSVLHLVAVHSASMYAGSDP 346
           VK++ G     TR VP+   +   P +   V  LV  HS   Y GSDP
Sbjct: 257 VKEMLGLSPFATRDVPMRNKAIKLPKKAPPVF-LVCTHSDEPYEGSDP 303


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 342 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCFQFVPATPYS 488
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 390 CRQEGCTCWNSAQRSAFSYWTFCFQFVPATPYSSALCDRHSTRISLGNFKL 542
           C + GC  W+ ++ S+  + T CF+       S     R  TR+  G+ +L
Sbjct: 480 CLKRGCE-WSQSELSSCRWPTVCFECGTMVELSDRTQSRARTRLETGSIRL 529


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 223 EEWGNQNSTPQRRKSFYPTQEKICASSGGRPFSKHVRRIR 342
           EE G+ NS PQ R+   P  ++  A+ GG+ F++ +  IR
Sbjct: 379 EEQGDSNSVPQNRQDSRPDTKQQQAAPGGQ-FNQDLNIIR 417


>SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)
          Length = 598

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = +1

Query: 226 EWGNQNSTPQRRKSFYPTQEKICASSGGRPFSKHVRRIR-----PNLKIGTVCILLAGRH 390
           E G ++ T Q +K+F    + I   S  RP   H   +R     P+ K+G   I++    
Sbjct: 5   EIGKEHVTAQDKKAFRAFVKTIYKGSP-RPVRDHHSCVRLKCSCPDFKVGQDYIIMGSAR 63

Query: 391 AGKRVVLVGILPSGLLLVTGPFAFNS 468
            GKR V   ++    L     +AFN+
Sbjct: 64  FGKRGVYRLVMNKDSLAEEWYYAFNN 89


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 262 SYVEGYCSGSPILLTSNLLYNNSQXLGLLRLRVLFANXLVFSXLVEHL 119
           ++ + Y  G P ++T     + +   GLL+L++L  N L F  L  HL
Sbjct: 485 NFYQPYPVGHPEVITEQFEEDLAVYRGLLKLKILPPNDLFFPVLPVHL 532


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,277,852
Number of Sequences: 59808
Number of extensions: 434047
Number of successful extensions: 1237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)