Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30469
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    69   4e-12
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical ...    28   6.9  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      28   6.9  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 37/59 (62%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
 Frame = +1

Query: 337 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGT 510
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI T
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIAT 125



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 510 STRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRK 671
           S ++++   K+P+H ND+YF               G +IFA+ K +Y  SEQRK
Sbjct: 126 SLKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVSEQRK 173


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
           protein F20C5.2b protein.
          Length = 1130

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 244 STPQRRKSFYPTQEKICASSGGRPFSKHVRRIRPNL 351
           STPQR  + Y + E++CA + G  FS + RRI   +
Sbjct: 890 STPQRGATVYGSGEQLCAENSGVGFSSN-RRIETEM 924


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 268 FYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 402
           FYPT+    A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical protein
            F23D12.2 protein.
          Length = 1322

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 227  NGGTRTVPLNVGSPSTPLRRKSVLHLVAVHSASMYAGSDPT*R*ELFA 370
            NGGT+ + L+   P TP+   SV+  V V S  +     P    EL A
Sbjct: 975  NGGTKGMSLSQTLPQTPIALSSVVESVEVISCKVSTEISPAKADELVA 1022


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 237  PEQYPST*EVLLPHSGENLCFIW--WPSIQQACTQDPTQPEDRNCL 368
            PEQ+  T E  L    E   FIW  W S  ++C QD  Q   + CL
Sbjct: 1068 PEQHIQTEECNLNSCLE--LFIWSDWSSCSKSCGQDGIQTRQKLCL 1111


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 237  PEQYPST*EVLLPHSGENLCFIW--WPSIQQACTQDPTQPEDRNCL 368
            PEQ+  T E  L    E   FIW  W S  ++C QD  Q   + CL
Sbjct: 1068 PEQHIQTEECNLNSCLE--LFIWSDWSSCSKSCGQDGIQTRQKLCL 1111


>AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical
           protein K09H9.2 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 431 PLGRIPTSTT--LLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEAQIFS*VG*KDFL 258
           P+  I ++TT  LL  CL A    T+P F++  I   C   G    +  + S    KD L
Sbjct: 132 PMKIIESATTVLLLHKCLEAPDSPTLPNFQVKTIGGKCFSTGELCPQVDVLSIGRLKDML 191

Query: 257 R*GVLFW 237
           R   L W
Sbjct: 192 REQELRW 198


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 237  PEQYPST*EVLLPHSGENLCFIW--WPSIQQACTQDPTQPEDRNCL 368
            PEQ+  T E  L    E   FIW  W S  ++C QD  Q   + CL
Sbjct: 1068 PEQHIQTEECNLNSCLE--LFIWSDWSSCSKSCGQDGIQTRQKLCL 1111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,917,063
Number of Sequences: 27780
Number of extensions: 310176
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)