Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30469
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    75   6e-14
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    75   6e-14
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    73   2e-13
At5g54060.1 68418.m06723 glycosyltransferase family protein cont...    29   2.1  
At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    29   2.8  
At5g46400.1 68418.m05711 expressed protein                             27   8.6  
At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family...    27   8.6  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 41/86 (47%), Positives = 54/86 (62%)
 Frame = +1

Query: 253 QRRKSFYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 432
           ++   FYP ++ +      R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 433 LLLVTGPFAFNSCPLRRIPQRYVIGT 510
           LLLVTGPF  N  PLRR+ Q YVIGT
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGT 142


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 41/86 (47%), Positives = 54/86 (62%)
 Frame = +1

Query: 253 QRRKSFYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 432
           ++   FYP ++ +      R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 433 LLLVTGPFAFNSCPLRRIPQRYVIGT 510
           LLLVTGPF  N  PLRR+ Q YVIGT
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGT 142


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 35/59 (59%), Positives = 43/59 (72%)
 Frame = +1

Query: 334 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGT 510
           +++ ++  GTV I+LAGR  GKRVV +  L SGLLLVTGPF  N  PLRR+ Q YVIGT
Sbjct: 84  KLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGT 142


>At5g54060.1 68418.m06723 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 468

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 237 PEQYPST*EVLLPHSGENLCFIWWPSIQQACTQDPTQPEDRNCLHSPRW*TCRQ-EGCTC 413
           P  YPS+  VL PH  ++L F+W          D      RNC  +    TCR+ EG  C
Sbjct: 175 PLGYPSSKVVLRPHEAKSLSFVWRKHEAIGSFFDGKVTAMRNC-DAIAIRTCRETEGKFC 233

Query: 414 -WNSAQRSAFSYWT 452
            + S Q S   Y T
Sbjct: 234 DYISRQYSKPVYLT 247


>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 229 WGNQNSTPQRRKSFYPTQEKICASSGGRPFSKHVRRIRP 345
           W N NS P   +++YP   +  A++   P+    R  RP
Sbjct: 319 WNNGNSIPNHAQNYYPNAARPGAATMRPPYGNVFRPYRP 357


>At5g46400.1 68418.m05711 expressed protein
          Length = 1036

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 463 NSCPLRRIPQRYVIGTPPEFHSATSNCQN-TSMMITS 570
           N+ P  +I  +++I +PPE  +  + CQN TS + TS
Sbjct: 814 NAYPQSQIHGQHMIVSPPESQNPQNQCQNSTSQVQTS 850


>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
           protein
          Length = 571

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +1

Query: 412 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTPPEFHSATSNCQNTSMMITSRRIRSAS 591
           + ILP+ +  V+    F S P        +  TPPEF S  +   +TS+   + R    S
Sbjct: 321 INILPTPVKPVSTLAKFPSTPAIIDSTPVITATPPEFASTPARLMSTSL---AARPLKRS 377

Query: 592 NVQSNAKRVMTSLPQK 639
           N  +N   +    P K
Sbjct: 378 NGHTNPDDISADPPTK 393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,135,119
Number of Sequences: 28952
Number of extensions: 289435
Number of successful extensions: 738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)