Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30468
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         30   1.3  
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    29   3.0  
11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600           27   9.2  
01_06_1749 - 39636951-39638102                                         27   9.2  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 267 HPSNRNALLLHGRNRQGGGTYPRGLTTGPTTSK 365
           H ++    LL GR R GGG + RGL   P  S+
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSR 314


>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 47  HTRLLSSVYSIPFAVILHISHXXXXXXYCLDGWTSSQ 157
           H R+   +Y+IPF ++L  ++        L  WTS Q
Sbjct: 150 HFRIYPIIYAIPFVIVLGKNYAGPAGRPILTQWTSKQ 186


>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
          Length = 251

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 240 LTTYISRWVAHLRCRC 193
           LTT +  W AH RCRC
Sbjct: 121 LTTALPPWEAHPRCRC 136


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 242 SQYSSTAAPPFKPKRITA 295
           S  +S AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,532,330
Number of Sequences: 37544
Number of extensions: 237924
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)