Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30468
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AC006632-10|AAK85471.1|  293|Caenorhabditis elegans Hypothetical...    28   3.6  

>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -2

Query: 242 TLQLISQGGWRIYVVDVYGLQ*PLNIKWAVSSSTHPSNXXXXXKSVICEELR 87
           ++QLI     RI+   VYG++ P+N+ W   +    +        +IC++ +
Sbjct: 218 SVQLIISSVRRIHDAAVYGIKDPINVSWPTIAIMGSTIAVKLTLFIICQKYK 269


>AC006632-10|AAK85471.1|  293|Caenorhabditis elegans Hypothetical
           protein F28A10.5 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 266 GQPLNYTETLQLISQGGWRIYVVD 195
           G PLN+ E LQ +++ G+RI+ VD
Sbjct: 234 GTPLNHFELLQTMAKYGFRIFNVD 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,583,452
Number of Sequences: 27780
Number of extensions: 197333
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)