Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30468
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22250.2 68415.m02642 aminotransferase class I and II family ...    29   2.5  
At2g22250.1 68415.m02641 aminotransferase class I and II family ...    29   2.5  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    28   4.4  

>At2g22250.2 68415.m02642 aminotransferase class I and II family
           protein similar to aspartate aminotransferase from
           Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
           SP|O33822; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 475

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 334 ADSQQVLPPVKISNNFNINPK 396
           AD+  V+ P KISNNF ++PK
Sbjct: 203 ADATPVVIPTKISNNFLLDPK 223


>At2g22250.1 68415.m02641 aminotransferase class I and II family
           protein similar to aspartate aminotransferase from
           Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
           SP|O33822; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 428

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 334 ADSQQVLPPVKISNNFNINPK 396
           AD+  V+ P KISNNF ++PK
Sbjct: 156 ADATPVVIPTKISNNFLLDPK 176


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
            cDNA putative transcription factor (HUA2) GI:4868119;
            contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 239  RSQYSSTAAPPFKPKRITASRQK*AGRWYLPARTHN 346
            +SQ+S T   PF P+R  A R +    W +P+  H+
Sbjct: 1279 QSQHSYTHPYPFPPQRDDARRYRNEEPWRIPSSGHS 1314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,931,344
Number of Sequences: 28952
Number of extensions: 183668
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)