Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30467
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   3.5  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    25   6.2  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   6.2  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   6.2  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   8.2  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   8.2  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 109 LLFPIFQVLDDL*LILRVCRNPFLLVSPEHTSHT 8
           +LF + QV   L   L  C NP +L S  H  HT
Sbjct: 513 ILFSLSQVQQALRQQLLFCSNPVVLDSMRHVLHT 546


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 495 TDTDPPHGPACRSVCRRSEPP 433
           ++T PPH PA  S    S PP
Sbjct: 584 SETSPPHAPAVSSTPVTSAPP 604


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 500 ALHCDSCGEKGHLKSM 547
           A HCDSCG K   K M
Sbjct: 266 AFHCDSCGTKFGYKHM 281


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 7/32 (21%), Positives = 24/32 (75%)
 Frame = +1

Query: 73  KDHLEPERSEIAERHIFRQRKQQNNESIRSYL 168
           K  + P+R+E+++  +  ++K++N+E+ ++++
Sbjct: 659 KSEVPPKRNELSQSKLKNRKKKENSETNKNHV 690


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 25  PDLPEEKDFDILVKLVKD---HLEPERSEIAERHIFRQRKQQNNES 153
           PD   E+D  I   LVK+    LE    EI +R+  R+ +  NN +
Sbjct: 88  PDWVLEQDLKIQKDLVKETHARLEQRLEEIRKRNQSRKNQMSNNST 133


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 101 K*QNVISSGKESSKITKAFVPTY 169
           K  N+ S  K SSK T+ ++P+Y
Sbjct: 56  KENNIASFQKPSSKATRPYIPSY 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,666
Number of Sequences: 5004
Number of extensions: 31449
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)