Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30467
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical...    29   3.2  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    28   4.3  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    28   4.3  
U80952-2|AAB38094.1|  309|Caenorhabditis elegans Muscle attachme...    28   5.7  
U80952-1|AAU20846.1|  315|Caenorhabditis elegans Muscle attachme...    28   5.7  
U28941-9|AAC71106.1|  452|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z47358-7|CAA87435.1|  369|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U41533-11|AAO38614.1|  387|Caenorhabditis elegans Hypothetical p...    27   9.9  
U41533-10|AAA83172.1|  491|Caenorhabditis elegans Hypothetical p...    27   9.9  
U41533-8|AAA83171.2|  588|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical...    27   9.9  

>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
           protein Y105C5B.2 protein.
          Length = 1044

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 15  LVCSGLTRRKGFRHTRKISQRS 80
           L+CSG+    GFRH R+I + S
Sbjct: 883 LICSGIPEMSGFRHLREICKIS 904


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 503 LHCDSCGEKGHLKSMCRNRKG 565
           + C +CG  GH+   C+N KG
Sbjct: 453 IKCTNCGAFGHISKDCKNPKG 473


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 503 LHCDSCGEKGHLKSMCRNRKG 565
           + C +CG  GH+   C+N KG
Sbjct: 453 IKCTNCGAFGHISKDCKNPKG 473


>U80952-2|AAB38094.1|  309|Caenorhabditis elegans Muscle attachment
           abnormal protein1, isoform a protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 540 FRCPFSPHESQCSACTDTDPPHGP 469
           F+ PFSPH           PPH P
Sbjct: 72  FQAPFSPHPPPVQQVPSYSPPHAP 95


>U80952-1|AAU20846.1|  315|Caenorhabditis elegans Muscle attachment
           abnormal protein1, isoform b protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 540 FRCPFSPHESQCSACTDTDPPHGP 469
           F+ PFSPH           PPH P
Sbjct: 78  FQAPFSPHPPPVQQVPSYSPPHAP 101


>U28941-9|AAC71106.1|  452|Caenorhabditis elegans Hypothetical
           protein F31D5.1 protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 248 PDTN*SRRLISNVMPKLQVLAKCFKLCR*ERMLSLFCCFLCLKI*RS 108
           P +  SR  +S   P  Q    CFKL + +RM+SL   F    + RS
Sbjct: 197 PQSEMSRNRVSQ--PFFQTTKNCFKLLKTQRMISLAVFFFYTGLVRS 241


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 506 HCDSCGEKGHLKSMCRNRKGNQ 571
           +C  CG++GH  + CR +K ++
Sbjct: 410 NCYYCGKRGHTANECRRKKSDE 431


>Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical
           protein C27B7.5 protein.
          Length = 386

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 506 HCDSCGEKGHLKSMCRNRKG 565
           HC  C E GH+  MC  + G
Sbjct: 169 HCFHCQEHGHISRMCPKKVG 188


>Z47358-7|CAA87435.1|  369|Caenorhabditis elegans Hypothetical
           protein ZK1307.9 protein.
          Length = 369

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 76  DHLEPERSEIAERHIFRQRKQQNNESIRS 162
           DHLE  R  I  R IFR+ ++ +  S  S
Sbjct: 243 DHLESSRDRIESRRIFRRPEETDTPSTSS 271


>U41533-11|AAO38614.1|  387|Caenorhabditis elegans Hypothetical
           protein R05F9.1c protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 558 RFRHIDFRCPFSPHESQCS-ACTDTDPPHGPA 466
           R RH+DF CP    +S  S A   +DP   PA
Sbjct: 279 RSRHVDFACPIVKSKSNPSLAAAASDPLPQPA 310


>U41533-10|AAA83172.1|  491|Caenorhabditis elegans Hypothetical
           protein R05F9.1a protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 558 RFRHIDFRCPFSPHESQCS-ACTDTDPPHGPA 466
           R RH+DF CP    +S  S A   +DP   PA
Sbjct: 383 RSRHVDFACPIVKSKSNPSLAAAASDPLPQPA 414


>U41533-8|AAA83171.2|  588|Caenorhabditis elegans Hypothetical
           protein R05F9.1b protein.
          Length = 588

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 558 RFRHIDFRCPFSPHESQCS-ACTDTDPPHGPA 466
           R RH+DF CP    +S  S A   +DP   PA
Sbjct: 480 RSRHVDFACPIVKSKSNPSLAAAASDPLPQPA 511


>U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical
           protein C16E9.2a protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 507 CSACTDTDPPHGPACRSVCRRSEPPRALRRPDA 409
           C+ CT T P +    R  C+R  P  + RR D+
Sbjct: 163 CAVCTKTGPQNLQIIRKNCQRVFPSPSRRRMDS 195


>AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.7 protein.
          Length = 474

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 531 PFSPHESQCSACTDTDPPHGPACRSVCRRSEPP 433
           P S  +S+ S+C+DT PP      S C   E P
Sbjct: 213 PKSLSDSRRSSCSDTSPPDLEEIASSCDEVEKP 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,848,741
Number of Sequences: 27780
Number of extensions: 188190
Number of successful extensions: 549
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)