Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30466
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 57 1e-08
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 55 7e-08
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 54 2e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 7e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 7e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 50 2e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 47 2e-05
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 36 0.036
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003) 30 2.4
SB_28741| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_11960| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0) 29 3.1
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 29 4.1
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 4.1
SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8) 29 5.5
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 29 5.5
SB_49471| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 57.2 bits (132), Expect = 1e-08
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +3
Query: 276 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 452
D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGVD 60
Query: 453 PETVESRLSSDGVLTITAPGRYPTPSRERERCPS 554
++ +R++ DG+L + A + P P+ + P+
Sbjct: 61 ESSISTRIAEDGMLHVEALKKSP-PATTENKAPA 93
Score = 48.4 bits (110), Expect = 6e-06
Identities = 29/80 (36%), Positives = 38/80 (47%)
Frame = +3
Query: 276 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 455
D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154
Query: 456 ETVESRLSSDGVLTITAPGR 515
+T+ RL DGVL I A R
Sbjct: 155 DTLVPRLGKDGVLYIEADKR 174
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 54.8 bits (126), Expect = 7e-08
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +3
Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
A K+ ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 2 AKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGI 60
Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRERER 545
PE V SR+S+ G L I A P P E E+
Sbjct: 61 DPENVTSRISNHGHLHIEARKALPKPEAELEK 92
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +3
Query: 270 KADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
KA +DKF + +DV F PE I V+ ++V Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150
Query: 450 APETVESRLSSDGVLTITA 506
+++ +RL +G L A
Sbjct: 151 DMDSLTTRLDKEGKLHFEA 169
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 53.6 bits (123), Expect = 2e-07
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +3
Query: 234 TRGCIS*LGSSIKADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYIS 410
TR C L ++ + + DK ++ LDV+++ PEEIS+K G I + Y +
Sbjct: 24 TRNCS--LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YET 80
Query: 411 RQFVRRYALPEGAAPETVESRLSSDGVLTITA 506
+F R Y LP+G TV SR++ DG+L I A
Sbjct: 81 SEFHRSYNLPDGVDVSTVSSRITGDGLLHIEA 112
Score = 26.2 bits (55), Expect(2) = 0.23
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 423 RRYALPEGAAPETVESRLSSDGVLTITAPG-RYPTPSRERE 542
R + LP+ +++ SRL DG L I A +PTP ER+
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTP-HERQ 200
Score = 25.8 bits (54), Expect(2) = 0.23
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 258 GSSIKADKDKFQVNLDVQHFSPE 326
G K D +F V LDV FSP+
Sbjct: 133 GDIAKIDDKRFTVTLDVSSFSPD 155
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRERE 542
V++R+S+ G L I A P P E
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 462 VESRLSSDGVLTITAPGR 515
+ +RL +G L A R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRERE 542
V++R+S+ G L I A P P E
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 462 VESRLSSDGVLTITAPGR 515
+ +RL +G L A R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +3
Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRERE 542
V++R+S+ G L I A P P E
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
Score = 48.0 bits (109), Expect = 8e-06
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 282 DKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 458
D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297
Query: 459 TVESRLSSDGVLTITAPGRYPTPSRERE 542
V++R+S+ G L I A P P E
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEE 325
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 462 VESRLSSDGVLTITAPGR 515
+ +RL +G L A R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 389
Query: 462 VESRLSSDGVLTITAPGR 515
+ +RL +G L A R
Sbjct: 390 LTTRLDKEGKLHFEAKKR 407
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +3
Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRERE 542
V++R+S+ G L I A P P E
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 462 VESRLSSDGVLTITAPGR 515
+ +RL +G L A R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 276 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 452
+++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62
Query: 453 PETVESRLSSDGVLTITAPGRYPTP 527
V++R+S+ G L I A P P
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPEP 87
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +3
Query: 258 GSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 437
G+ ++ DKF + +DV+ F PE I V+ ++V Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147
Query: 438 PEGAAPETVESRLSSDGVLTITAPGR 515
P +++ +RL +G L A R
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKR 173
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 35.9 bits (79), Expect = 0.036
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 261 SSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALP 440
S+ D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 19 SAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLP 77
Query: 441 E 443
+
Sbjct: 78 Q 78
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 249 RCSRELSPRSEVVFGEHWTGDGSQHVVR 166
R SR SP + FG TGDG QH+V+
Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVK 127
>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
Length = 658
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 525 PSRERERCPSHRTGPVSQGDQGP 593
P+++ +CP + TGP QG+Q P
Sbjct: 378 PTQQGNQCPCNMTGPTQQGNQCP 400
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 525 PSRERERCPSHRTGPVSQGDQGP 593
P+++ +CP + TGP QG+Q P
Sbjct: 392 PTQQGNQCPCNMTGPTQQGNQCP 414
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 525 PSRERERCPSHRTGPVSQGDQGP 593
P+++ +CP R GP QG+Q P
Sbjct: 364 PTQQWNQCPCIRAGPTQQGNQCP 386
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 525 PSRERERCPSHRTGPVSQGDQGP 593
P+++ +CP TGP QG+Q P
Sbjct: 406 PTQQGNQCPCVMTGPTQQGNQCP 428
>SB_28741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 565 PVLCDGHLSLSLDGVGYLPGAVMVRTPSDDS 473
PV+ DGH+S +DG +LP V ++T S+ +
Sbjct: 35 PVIGDGHISPVIDG-NFLPATVKLKTRSNSA 64
>SB_11960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 565 PVLCDGHLSLSLDGVGYLPGAVMVRTPSDDS 473
PV+ DGH+S +DG +LP V ++T S+ +
Sbjct: 109 PVIGDGHISPVIDG-NFLPATVKLKTRSNSA 138
>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
Length = 636
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 574 ETGPVLCDGHLSLSLDGVGYLPGAVMVRTPSDDSRDSTVSGAAPSGSA*RRTNCLEIY 401
+TG VL G LSL GV + A++ R P + + A RRT + +Y
Sbjct: 578 DTGKVLWQGSEDLSLPGVEHEAHAMLARRPEETKPEVGFETEVCLPQAPRRTRRIRVY 635
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 477 TAAIPQSQAPRLQAARNVGRTALKYTRARLSSLRA 373
TA +P QA RL R G +YTR +SSL A
Sbjct: 1773 TAPVPNKQA-RLTIGRQSGNAPYRYTRMYISSLYA 1806
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 423 RRYALPEGAAPETVESRLSSDGVLTITAPGRYPTPSRERERCPSHRTGPVSQGDQGPERX 602
RR + + P + + + + G +P R T R+R P++R+ P + P R
Sbjct: 515 RRVSPTQAVRPSSTQGQSAPVG--RTKSPSRSYTSPRQRRTSPNNRSPPPRRRSPSPRRP 572
Query: 603 NPGCRK 620
+P R+
Sbjct: 573 SPSPRR 578
>SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)
Length = 293
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 507 PGRYPTPSRERERCPSHRTGPVSQGDQGP 593
P P+++ ++CP + GP QG+Q P
Sbjct: 68 PCNMAEPTQQGKQCPCNMAGPTQQGNQFP 96
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 525 PSRERERCPSHRTGPVSQGDQGP 593
P+++ +CP + GP QG+Q P
Sbjct: 18 PTQQGNQCPCNMAGPTQQGNQCP 40
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 525 PSRERERCPSHRTGPVSQGDQGP 593
P+++ +CP + GP QG+Q P
Sbjct: 116 PTQQGNQCPCNMAGPTQQGNQCP 138
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/81 (29%), Positives = 28/81 (34%)
Frame = +3
Query: 438 PEGAAPETVESRLSSDGVLTITAPGRYPTPSRERERCPSHRTGPVSQGDQGPERXNPGCR 617
P AP T E G PG P PS PSH GP GP +P
Sbjct: 53 PMTGAPSTWEPWTDGPGPYPTDGPG--PHPSHGPGPHPSHGPGPHPSHGPGP---HPSSG 107
Query: 618 K*VGWFAMVHFNLFQSIVCIR 680
V WF L S+ ++
Sbjct: 108 PGVNWFGRFLRLLHNSVKTVK 128
>SB_49471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 438 AARNVGRTALKYTRARLSSLRACLPPRCTRRQSSPKSLPARSAARPD 298
A R T +++TR+R + L+ CL R R +P +L + R D
Sbjct: 25 AKREDNYTRIRFTRSRRAKLQQCLYERFFRELHAPWALEDNNGERLD 71
>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = +3
Query: 438 PEGAAPETVESRLSSDGVLTITAPGRYPTPSRERERCPSHRTGPVSQGDQGPERXNPGCR 617
P GA P + DGV T P P PS + + TG S G P R R
Sbjct: 460 PRGA-PYRPSPPRTGDGVAKDTTPRAAPIPSFSEWKKSNESTGDSSSGGASPARTTSPAR 518
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,026,378
Number of Sequences: 59808
Number of extensions: 500193
Number of successful extensions: 1439
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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