Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30466
(767 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS... 32 0.37
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote... 32 0.37
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS... 32 0.48
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote... 31 0.64
At4g25434.1 68417.m03661 MutT/nudix family protein similar to SP... 29 2.6
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ... 29 3.4
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ... 29 3.4
At1g65710.1 68414.m07458 expressed protein ; expression supporte... 29 4.5
At4g14830.1 68417.m02280 expressed protein 28 6.0
At3g45690.1 68416.m04938 proton-dependent oligopeptide transport... 28 6.0
>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
(HSP17.4-CI) identical to 17.4 kDa class I heat shock
protein SP:P19036 from [Arabidopsis thaliana]
Length = 156
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
S +F+RR+ LPE A E V++ + +GVL++T P
Sbjct: 108 SGKFMRRFRLPENAKVEEVKASM-ENGVLSVTVP 140
>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
(HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
crystallin family; identified in Scharf, K-D., et al,
Cell Stress & Chaperones (2001) 6: 225-237.
Length = 153
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
S QF RR+ LPE + V++ + +GVLT+T P
Sbjct: 105 SGQFTRRFRLPENVKMDQVKAAM-ENGVLTVTVP 137
>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
(HSP18.1-CI) identical to 18.2 kDa class I heat shock
protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
contains Pfam profile: PF00011 Hsp20/alpha crystallin
family
Length = 161
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
S +F+RR+ LPE A E V++ + +GVLT+ P
Sbjct: 111 SGKFMRRFRLPENAKMEEVKATM-ENGVLTVVVP 143
>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
(HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
(GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
17 (19), 7995 (1989))
Length = 157
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
S +F RR+ LPE A E +++ + +GVL++T P
Sbjct: 109 SGKFTRRFRLPENAKMEEIKASM-ENGVLSVTVP 141
>At4g25434.1 68417.m03661 MutT/nudix family protein similar to
SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
{Homo sapiens}; contains Pfam profile PF00293: NUDIX
domain
Length = 304
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 659 EQIKMHHCKPPYLFSASWVPSLWSLISLRNGTGSVR 552
E + HH +P YL W+P S I L N + VR
Sbjct: 80 EGFRYHHAEPTYLMLVYWIPEAESTIPL-NASHRVR 114
>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 626
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 562 VLCDGHLSLSLDGVGYLPGAVMVRTP 485
VL DGH+ + + L G +MVRTP
Sbjct: 565 VLADGHIPWACEAFSRLHGPIMVRTP 590
>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 631
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 562 VLCDGHLSLSLDGVGYLPGAVMVRTP 485
VL DGH+ + + L G +MVRTP
Sbjct: 570 VLADGHIPWACEAFSRLHGPIMVRTP 595
>At1g65710.1 68414.m07458 expressed protein ; expression supported
by MPSS
Length = 455
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +3
Query: 513 RYPTPSRERERCPSHRTGPVSQGDQGPER 599
R TPSRERER S G V G G R
Sbjct: 169 RRRTPSRERERSGSRERGNVGGGGGGSRR 197
>At4g14830.1 68417.m02280 expressed protein
Length = 152
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 420 VRRYALPEGAAPETVESRLSSDGVLTITAP 509
V R+ LPE PE V DG L +T P
Sbjct: 109 VWRFRLPESTRPELVTVDCDGDGELIVTVP 138
>At3g45690.1 68416.m04938 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 516
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 580 PCETGPVLCDGHLSLSLDGVGYLPGAVMV 494
PCETG +LC+ L L G+ Y+ A+++
Sbjct: 120 PCETGSILCESPSKLQL-GILYIALALVI 147
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,914,654
Number of Sequences: 28952
Number of extensions: 334945
Number of successful extensions: 934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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