Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30465
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    27   2.7  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    26   3.6  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    26   3.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   4.7  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    26   4.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.2  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   8.3  

>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -3

Query: 490 LDVACSRRVTWSYVLPSSCCIGSHLYRSRLAEE----RTPRTTLAACVVLCP*RSLVRL 326
           +D A S  +TW+Y L  +  + SH+  +RL  +     T    ++A + L P +  VR+
Sbjct: 91  VDEALSFSLTWNYWLNDTIALASHVLATRLVVDFWLIPTEGDPVSASLSLPPWKEAVRI 149


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 382 VESSPRPVEICTDVTRYNTRKVKRTTKSHV 471
           ++SSP P+E+    T +  + VK   K H+
Sbjct: 662 LKSSPSPIELTEQETEFVVKVVKHVFKDHL 691


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 423 DPIQHEEGKTYDQVTRLLQATSRTNGHEPQGTCQXNCGY 539
           DPIQ  +GK      RL+  ++   G EP+ T   N G+
Sbjct: 145 DPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTS-NLGH 182


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +1

Query: 364 RQPTSFVESSPRPVEICTDVTRYNTRKVKRTTKSHVYCK 480
           RQP  F    PR  EIC  +T YN  +V      H   K
Sbjct: 178 RQPLFF---QPRKTEICIAITMYNEDEVLFARTMHSVMK 213


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 346 TDKGQHRQPTSFVESSPRPVEICTDVTRYNTR 441
           T+   H+  T F+E  P P +  T +TR +TR
Sbjct: 54  TNVSSHQSATKFIEPEPSPTK-KTKLTRRDTR 84


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 37   REWMDLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQE 168
            R  MD  + +L+D K++VTN    +G  +    A T  L  L+E
Sbjct: 1096 RMTMDYCKRMLLDRKANVTNVFNTIGLPIHQQMAATIFLENLKE 1139


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 418 DVTRYNTRKVKRTTKSHVYCKLHRER 495
           D T Y+ R+    T S+V C  HR +
Sbjct: 7   DFTEYSHRRYNPLTDSYVLCSPHRAK 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,354
Number of Sequences: 5004
Number of extensions: 49790
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)