Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30465
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284...    31   0.69 
05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513           29   2.8  
11_06_0347 + 22555087-22555943,22556638-22558783                       29   3.7  
04_03_0572 + 17310729-17310746,17312209-17312902,17312991-173134...    28   4.8  
08_02_1101 - 24308433-24308978,24309195-24309364,24309443-243095...    27   8.5  
02_03_0144 + 15694766-15694883,15694980-15697612                       27   8.5  

>11_01_0374 -
           2843405-2843508,2844134-2844239,2844327-2844409,
           2844886-2845078,2845527-2845662,2846185-2846264,
           2846348-2846932,2847058-2847126,2847203-2847347,
           2847442-2847542,2848208-2849066,2849397-2849536,
           2849606-2849783,2849885-2850287,2850770-2850833,
           2851223-2851278,2851470-2851572
          Length = 1134

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 105 LHRVRNRRLGVHQHRFGEVHPFPNWRRNSAGP 10
           L ++  R+L  H HR   V P   WRR    P
Sbjct: 116 LSQLSKRQLSAHDHRLSTVAPVSRWRRKVGSP 147


>05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513
          Length = 621

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 234 HSPGRDKGYAIMQFSWMLLKLYGKGNFSQEASLTRERY 347
           H+   D G  ++ F W+LL  +G GN + E  LT  RY
Sbjct: 569 HARRLDNGSELLTFIWLLLVHHGLGNVA-EFGLTLGRY 605


>11_06_0347 + 22555087-22555943,22556638-22558783
          Length = 1000

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/80 (26%), Positives = 38/80 (47%)
 Frame = +1

Query: 1   DASRPGAVPAPVREWMDLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTD 180
           ++  PG  PAP+   +  TE V MD      N +++   +      ++Y L ++  GG  
Sbjct: 155 NSGAPGDHPAPLPRLIGTTEPVGMD---DAMNDLQRWFMVSKQNSQISY-LAIVGSGGLG 210

Query: 181 VCTLQMSPHQLIYDIYNTIA 240
             TL MS ++   D +++ A
Sbjct: 211 KTTLAMSFYRKFGDEFDSRA 230


>04_03_0572 +
           17310729-17310746,17312209-17312902,17312991-17313400,
           17325755-17326063
          Length = 476

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 521 ARSLRFMSIRSRCSLQ*TCDLVVRFTFLVLYRVT-SVQISTGRGED 387
           A   RF+ +R  CS    CD+V  F  L ++ ++ S Q+   +GE+
Sbjct: 178 AMEARFVLLRKVCSRLSCCDMVEEFCMLRIFPLSQSWQVRVDQGEE 223


>08_02_1101 -
           24308433-24308978,24309195-24309364,24309443-24309542,
           24310337-24310500,24310960-24310996,24311222-24311262,
           24313877-24314093
          Length = 424

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +3

Query: 210 IDLRHLQHHSPGRDKGYAIMQFS--WMLLKLYGKGNFSQEASLTRERYGQRTTQAANVVR 383
           +D + ++ H   R +G+  + FS   ++  L   GN    A    E       +++N   
Sbjct: 200 VDHQIMRDHQTKRSRGFGFIVFSSDQVVDDLLANGNMIDLAGAKVEIKKAEPKKSSNPPP 259

Query: 384 GVLSSASRDLYRCDPIQHEEGKTY 455
               SASR  Y  D   H  G  Y
Sbjct: 260 SSHGSASRSAYGRDSRGHSSGNDY 283


>02_03_0144 + 15694766-15694883,15694980-15697612
          Length = 916

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 9   TARRCSGASSGMDGPHRSGADGPQVVCYELDEETGRADEPRRGCHLPPRHATGGRH 176
           +A+ C G  S  DG  +SG       C++ DE T   ++ +   H+   + T   H
Sbjct: 460 SAKLCEGTISSFDGHLKSGQ------CFQEDEPTADGNKQKEESHMGNNNVTDCAH 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,555,421
Number of Sequences: 37544
Number of extensions: 395171
Number of successful extensions: 1257
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)