Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30465
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36)               32   0.40 
SB_38104| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)                  30   1.6  
SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43)                30   1.6  
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)              30   1.6  
SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)                    30   1.6  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_2143| Best HMM Match : ig (HMM E-Value=1.9e-09)                     28   6.6  
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                28   6.6  
SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         27   8.7  
SB_30282| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)         27   8.7  
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 27   8.7  

>SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36)
          Length = 436

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 213 DLRHLQHHSPGRDKGYAIMQFSWMLLKLYGKGNFSQ 320
           +++ LQH    R K +  +   ++LL L GKG FS+
Sbjct: 146 EIKRLQHEDNSRFKNHPKLNNQYLLLSLLGKGGFSE 181


>SB_38104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -3

Query: 418 LYRSRLAEERTPRTTLAACVVLCP*RSLVRLASCEKFPFPYNLSSIHENCIMAYPLSRPG 239
           L+R  L     PR TLA    LC       +++C  F +     +   NC +   + RPG
Sbjct: 70  LFRPDLMYAERPRPTLAIAGYLCTWNDPAYISNCRLFMYVKRPPAYISNCRLFMYVKRPG 129

Query: 238 L 236
           L
Sbjct: 130 L 130


>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +1

Query: 286 CSNCTEKETSH-KRRV*LENVTDKGQHRQPTSFVESSPRP----VEICTDVTRYNTRKV 447
           C   TE++ +  K    ++N+TD  +H +PT+ V  +  P     EIC D+  +N R V
Sbjct: 391 CGGLTEQKLAFAKEHEYIDNLTDVVKHIKPTTIVGVAAVPGAFTEEICRDMASFNDRPV 449


>SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)
          Length = 345

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +3

Query: 102 EETGRADEPRRGCHLPPRHATGGRHGRVHVADVPASIDLRHLQHHSPGRDKGYAI 266
           ++  R  E  +GCH+  R    G  G+V   D   S D RHL   S G D+   I
Sbjct: 201 KDVSRKLESLQGCHMKVRRILKGHQGKVLSMD--WSGDCRHLVSSSQGCDRAALI 253


>SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43)
          Length = 1280

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 73   DPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTDVCT 189
            +PK +VT +     +++  GE +T+  V + +GG  VCT
Sbjct: 1004 NPKPNVTWTRSGKKDVLGTGETLTFSNVKISDGGCYVCT 1042



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 73  DPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTDVCT 189
           +P  +VT +     +++  GE +T+R V + +GG  VCT
Sbjct: 306 NPTPNVTWTRSGKEDVLWTGETLTFRDVKISDGGCYVCT 344


>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
          Length = 621

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 489 RTNGHEPQGTCQXNCGYYTLTQRYGCYDDQLCNQ 590
           + + + P+ TC   CG    T +  CY D +CN+
Sbjct: 149 KCHSNVPRLTCHNRCGASERTTQQKCYCDVICNE 182


>SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)
          Length = 960

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 73  DPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTDVCT 189
           +PK +VT +     +++  GE +T+  V + +GG  VCT
Sbjct: 146 NPKPNVTWTRSGKKDVLGTGETLTFSNVKISDGGCYVCT 184


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 486 SRTNGHEPQGTCQXNCGYYTLTQRYGCYDDQL 581
           +R N + P  T Q NCG+ T TQ Y C+  ++
Sbjct: 92  TRANWNHPSKT-QANCGHPTETQAYLCHPTKI 122


>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 423 DPIQHEEGKTYDQVTRLLQATSRTN 497
           DP+   +GK YD V +L Q   +TN
Sbjct: 282 DPVCGSDGKNYDNVCKLRQNACKTN 306


>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
 Frame = +3

Query: 306 GNFSQEASLTRERYGQRTTQAANVVRG---VLSSASRDLYRCDPIQHEEGKTYDQVTRLL 476
           G   Q+A       G+    A  VVR    V+S A R +     +  + G+      R++
Sbjct: 158 GRVMQDAGRVVRDAGRVVRDAGRVVRDAGRVVSDAGRVMQDAGRVVRDAGRVMQDAGRVV 217

Query: 477 QATSRTNGHEPQGTCQXNCG 536
           +   R  G    GTC   CG
Sbjct: 218 RDAGRVKG---CGTCGKGCG 234


>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 6   ITARRCSGASSGMDGP--HRSGADG--PQVVCYELDEETGRA 119
           +T R CSG ++G  GP  + S  +G   Q + Y  D  +GRA
Sbjct: 342 LTVRYCSGCAAGFTGPACNTSLGEGYWTQHIAYNQDAMSGRA 383


>SB_2143| Best HMM Match : ig (HMM E-Value=1.9e-09)
          Length = 306

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 49  DLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTDVCT 189
           +LT +   +P  +VT +      ++  GE +T+  V + +GG  VCT
Sbjct: 138 ELTCSATGNPTPNVTWTRSGKENVLGTGETLTFSDVKISDGGCYVCT 184


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/81 (22%), Positives = 37/81 (45%)
 Frame = +3

Query: 243 GRDKGYAIMQFSWMLLKLYGKGNFSQEASLTRERYGQRTTQAANVVRGVLSSASRDLYRC 422
           GRDK   + +   +L +L   G    +   T +R  +RT+Q  + ++  L++  +++   
Sbjct: 201 GRDKNTELTELRDLLNRLTVLGEKQTKDLETLQRLQERTSQERDNLKESLNTKDKEVLAL 260

Query: 423 DPIQHEEGKTYDQVTRLLQAT 485
           D     +    D++T  L  T
Sbjct: 261 DEKLRRQNAELDKLTSELSTT 281


>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 97  SMKKLGELMSHGEAVTYRLVMLQEGGTDVCTLQMS 201
           SM ++  +   G+  T+ +V L+EG T++C L ++
Sbjct: 56  SMVEVTSMDFKGDDSTHTIVSLREGATEMCALNLA 90


>SB_30282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 372 NVVRGVLSSASRDLYRCDPIQHEEGKTYDQVTRLLQATSRTNGHEPQGTCQ 524
           N   G+    +      DPI   + +T +Q +R   A S+ +G E +  CQ
Sbjct: 342 NTASGLSEPPNTGEVNVDPISPVQQQTEEQTSRAEIAESKADGEEEETICQ 392


>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
          Length = 609

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 372 NVVRGVLSSASRDLYRCDPIQHEEGKTYDQVTRLLQATSRTNGHEPQGTCQ 524
           N   G+    +      DPI   + +T +Q +R   A S+ +G E +  CQ
Sbjct: 30  NTASGLSEPPNTGEVNVDPISPVQQQTEEQTSRAEIAESKADGEEEETICQ 80


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 39  GMDGPHRSGADGPQVVCYELDEETGRADEPRRGCHLPPR 155
           G DGPH  G DGP+   +   EE G   + RR    PPR
Sbjct: 846 GPDGPHFGGPDGPR---FRGPEERGPGGQFRR--QGPPR 879


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,765,284
Number of Sequences: 59808
Number of extensions: 450959
Number of successful extensions: 1438
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)