Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30465
(591 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69788-5|CAD44117.1| 314|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 29 3.3
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 29 3.3
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 29 3.3
U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF077540-6|AAC26309.1| 315|Caenorhabditis elegans Hypothetical ... 27 7.5
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 27 10.0
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 27 10.0
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 27 10.0
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 27 10.0
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 27 10.0
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 27 10.0
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 27 10.0
AF040655-7|AAB95044.2| 565|Caenorhabditis elegans Hypothetical ... 27 10.0
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 27 10.0
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 27 10.0
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 27 10.0
>Z69788-5|CAD44117.1| 314|Caenorhabditis elegans Hypothetical
protein F09A5.4d protein.
Length = 314
Score = 29.5 bits (63), Expect = 1.9
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 466 VTWSYVLPSSCCIGSHLYRSRLAEERTPRT-TLAACVVLCP*RSLVRLASCEKFPFPYNL 290
V +S+ PSS S L RSR ++ERT T T A V R R+AS P
Sbjct: 17 VYYSFYFPSSSSSSSFLPRSRRSKERTATTGTGGAAVASAADRMSKRVASASLAVRPQAK 76
Query: 289 SS 284
SS
Sbjct: 77 SS 78
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 516 TCQXNCGYYTLTQRYGCYD 572
TC+ CG+Y +TQR Y+
Sbjct: 163 TCKCQCGFYPITQRLTAYE 181
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 516 TCQXNCGYYTLTQRYGCYD 572
TC+ CG+Y +TQR Y+
Sbjct: 163 TCKCQCGFYPITQRLTAYE 181
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 516 TCQXNCGYYTLTQRYGCYD 572
TC+ CG+Y +TQR Y+
Sbjct: 163 TCKCQCGFYPITQRLTAYE 181
>U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical
protein K06A1.6 protein.
Length = 937
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 15 RRCSGASSGMDGPHRSGADGPQVVCYELDEE 107
++ SGA+ GMDG R+G+ ++VC E ++
Sbjct: 54 QQLSGAADGMDGSSRAGSQ--EIVCDEFTKK 82
>AF077540-6|AAC26309.1| 315|Caenorhabditis elegans Hypothetical
protein T07H3.2 protein.
Length = 315
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = -3
Query: 313 KFPFPYNLSSIHENCIMAYPLSRPGLWCCKC-RKSIDAGTSATCTRP 176
KF F Y E+C+ Y + LW RK+ S C +P
Sbjct: 169 KFTFKYTFEKFDEDCVGGYNVQLGFLWSLNIHRKNDHLRISLCCDKP 215
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 328 LASCEKFPFPYNLSSIHENCIMAYPLSRPGLWCCKCRKS 212
+ C K P L H++C+ + + G CKCR S
Sbjct: 451 VCKCSKCP---PLHQCHKHCLYGFETNSAGCSLCKCRAS 486
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 328 LASCEKFPFPYNLSSIHENCIMAYPLSRPGLWCCKCRKS 212
+ C K P L H++C+ + + G CKCR S
Sbjct: 385 VCKCSKCP---PLHQCHKHCLYGFETNSAGCSLCKCRAS 420
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 328 LASCEKFPFPYNLSSIHENCIMAYPLSRPGLWCCKCRKS 212
+ C K P L H++C+ + + G CKCR S
Sbjct: 385 VCKCSKCP---PLHQCHKHCLYGFETNSAGCSLCKCRAS 420
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 328 LASCEKFPFPYNLSSIHENCIMAYPLSRPGLWCCKCRKS 212
+ C K P L H++C+ + + G CKCR S
Sbjct: 451 VCKCSKCP---PLHQCHKHCLYGFETNSAGCSLCKCRAS 486
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 328 LASCEKFPFPYNLSSIHENCIMAYPLSRPGLWCCKCRKS 212
+ C K P L H++C+ + + G CKCR S
Sbjct: 385 VCKCSKCP---PLHQCHKHCLYGFETNSAGCSLCKCRAS 420
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 328 LASCEKFPFPYNLSSIHENCIMAYPLSRPGLWCCKCRKS 212
+ C K P L H++C+ + + G CKCR S
Sbjct: 385 VCKCSKCP---PLHQCHKHCLYGFETNSAGCSLCKCRAS 420
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 328 LASCEKFPFPYNLSSIHENCIMAYPLSRPGLWCCKCRKS 212
+ C K P L H++C+ + + G CKCR S
Sbjct: 385 VCKCSKCP---PLHQCHKHCLYGFETNSAGCSLCKCRAS 420
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 328 LASCEKFPFPYNLSSIHENCIMAYPLSRPGLWCCKCRKS 212
+ C K P L H++C+ + + G CKCR S
Sbjct: 385 VCKCSKCP---PLHQCHKHCLYGFETNSAGCSLCKCRAS 420
>AF040655-7|AAB95044.2| 565|Caenorhabditis elegans Hypothetical
protein T24E12.9 protein.
Length = 565
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 EPRRGCHLPPRHATGGRH-GRVHVADVPASIDLRHLQHHSPGRDK 254
EPRRG P HAT R+ + D P L+ SP + K
Sbjct: 411 EPRRGVSSAPDHATSSRYCHKFGRPDAPGPSTLKRQSKTSPVKAK 455
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 16 GAVPAPVREWMDLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTD 180
G PAP++ +D+ +DPK K GEL ++ L+ L +G TD
Sbjct: 315 GNYPAPLKI-LDVVRTAYVDPKKGFEAEAKAFGELSQTFQSKA--LIGLFDGSTD 366
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 16 GAVPAPVREWMDLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTD 180
G PAP++ +D+ +DPK K GEL ++ L+ L +G TD
Sbjct: 289 GNYPAPLKI-LDVVRTAYVDPKKGFEAEAKAFGELSQTFQSKA--LIGLFDGSTD 340
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 16 GAVPAPVREWMDLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTD 180
G PAP++ +D+ +DPK K GEL ++ L+ L +G TD
Sbjct: 315 GNYPAPLKI-LDVVRTAYVDPKKGFEAEAKAFGELSQTFQSKA--LIGLFDGSTD 366
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,080
Number of Sequences: 27780
Number of extensions: 302465
Number of successful extensions: 1007
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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