Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30465
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   0.97 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.0  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 45  PFPNWRRNSAG 13
           P+PNW +N AG
Sbjct: 111 PYPNWAQNKAG 121


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 201 PASIDLRHLQHHSP 242
           PA+I + H  HH P
Sbjct: 454 PAAIQIGHTPHHHP 467


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 346  TDKGQHRQPTSFVESSP 396
            T +GQ RQ + F +SSP
Sbjct: 1243 TLRGQERQRSLFKDSSP 1259


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -1

Query: 54  EVHPFPNWRRN 22
           +++P+PNW  N
Sbjct: 91  KLNPYPNWEMN 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,272
Number of Sequences: 438
Number of extensions: 3831
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)