Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30465
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31570.1 68417.m04483 expressed protein                             31   0.76 
At3g04740.1 68416.m00510 expressed protein (SWP1)                      30   1.3  
At5g59780.2 68418.m07493 myb family transcription factor (MYB59)...    29   3.1  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    29   3.1  
At3g61340.1 68416.m06864 F-box family protein contains F-box dom...    29   3.1  
At3g51590.1 68416.m05652 lipid transfer protein, putative simila...    29   3.1  
At1g21240.1 68414.m02654 wall-associated kinase, putative simila...    29   3.1  
At1g07450.1 68414.m00795 tropinone reductase, putative / tropine...    29   3.1  
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ...    28   4.1  
At1g63830.2 68414.m07224 proline-rich family protein contains pr...    28   4.1  
At1g63830.1 68414.m07223 proline-rich family protein contains pr...    28   4.1  
At2g44850.1 68415.m05584 expressed protein                             28   5.4  
At3g14300.1 68416.m01809 pectinesterase family protein contains ...    27   7.1  
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ...    27   9.4  
At1g12880.1 68414.m01496 MutT/nudix family protein similar to di...    27   9.4  

>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +1

Query: 253 KDTP*CSSRGCCSNCTEKETSHKRRV*LENVTDKGQHRQPTSFVESSPRPVEICTDVTRY 432
           KD+   +S+G  S  + K   H+R+     V+D+ Q   P + V  +   V +  +V   
Sbjct: 34  KDSKGSTSQGKSSKKSNKSEKHERKPDTSAVSDEAQAPSPVT-VGGATSHVNVAEEVV-- 90

Query: 433 NTRKVKRTTKSHVYCKLH 486
           ++ +    TK+H Y  +H
Sbjct: 91  DSPQTSSDTKAHEYVSVH 108


>At3g04740.1 68416.m00510 expressed protein (SWP1)
          Length = 1703

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 124  SHGEAVTYRLVMLQEGGTDVCTLQMSPHQL 213
            S G  V  R V+  E G D CT+ +SP QL
Sbjct: 1060 SFGSGVLARFVVEWESGKDGCTMHVSPDQL 1089


>At5g59780.2 68418.m07493 myb family transcription factor (MYB59)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 214

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
 Frame = +3

Query: 153 RHATGGRHGRVHVADVPASIDLRHLQHHSPGRDKGYAIMQFSWMLLKLYGKGNFSQEASL 332
           R   GGR+ R+ +     S  LR + +  PG  +G    Q   ++L+L+ K   ++ + +
Sbjct: 9   RFEGGGRNIRIGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWG-NRWSKI 67

Query: 333 TRERYGQRTTQAANVVRGVLSSASRDLYRCDPIQHEEGKTYDQVTRLLQATSRTNGHEPQ 512
            R+  G+   +  N  R  +   +++  R  P+      +    + +   TS+  G    
Sbjct: 68  ARKLPGRTDNEIKNYWRTHMRKKAQEKKR--PMSPTSSSSNCCSSSMTTTTSQDTGGS-N 124

Query: 513 GTCQXNC--GYYTL 548
           G     C  GYY++
Sbjct: 125 GKMNQECEDGYYSM 138


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
 Frame = -3

Query: 511 CGSCPFVLDVAC---SRRVTWSYVLPSSCCIGSHLYRSRLAEERTPRTTLAACVVLCP*R 341
           C +C + +++AC    RR++  +       +     ++ L       T       +CP  
Sbjct: 251 CPACDYAINIACVEKPRRLSVDHPKWHEHTLSLFPRKTPLTCSVCALTHTRCPFYICPPC 310

Query: 340 SLVRLASCEKFPFPYNLSSIHENCIMAYPLSRPGLWCCK-CRKSID 206
             V   SC   P    +S  H      +   + G W C  CRK ID
Sbjct: 311 DFVAHQSCFSLPRVIRISRHHHRISFTHSFEK-GDWSCGVCRKKID 355


>At3g61340.1 68416.m06864 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 410

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
 Frame = -3

Query: 328 LASCEKF----PFPYNLSSIHENCIMAYPLSRPGL-------WCCKCRKSIDAGTSATCT 182
           L  CE F    P P +LS I  N  M++P+S P         W C   +    GT+ T  
Sbjct: 78  LKDCETFFFSSPHPQDLSPIAANLHMSFPISCPSNICRPVRGWLCGLHQRTTKGTTVTEP 137

Query: 181 RPCLP 167
             C P
Sbjct: 138 LICNP 142


>At3g51590.1 68416.m05652 lipid transfer protein, putative similar
           to lipid transfer protein E2 precursor, Brassica napus,
           PIR:T07984 [GI:899224]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 119

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 517 VPCGSCPFVLDVACSRRVTWSYVLPSSCCIG-SHLYRSRLAEERTPRTTLAACVVL 353
           + CG+    L   C   +T S  LPS CC+G   LY  +LA+    R  +  C+ L
Sbjct: 26  IQCGTVTSTL-AQCLTYLTNSGPLPSQCCVGVKSLY--QLAQTTPDRKQVCECLKL 78


>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 741

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 250 SRPGLWCCKCRKSIDAGTSATCTRP 176
           +R G + CKC    D  +S +CTRP
Sbjct: 312 NRDGGFDCKCPSGYDLNSSMSCTRP 336


>At1g07450.1 68414.m00795 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 260

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 249 DKGYAIMQFSWMLLKLYGKGNFSQEASLTRERYGQRTTQAANVVRGVLSSASRDL 413
           +  Y I Q +  LLK  G GN    +S+T    G  T+    V +G L+  +RDL
Sbjct: 121 ESAYYISQLAHPLLKASGNGNIVFISSVTGVVSG--TSTIYGVTKGALNQLARDL 173


>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 649

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
 Frame = -3

Query: 355 LCP*RSLVRLASCEKFPFPYNLSSIHENCIMAYPLSRPGLWCCK-CRKSIDAGTSATCTR 179
           +CP    V  A C   P    +S  H +CI        G W C  CR+ +D    A    
Sbjct: 262 VCPICDFVTHADCIYIPQTIRISR-HHHCISFTSSLLKGKWSCGVCRQEVDRKYGAYTCN 320

Query: 178 PC 173
            C
Sbjct: 321 AC 322


>At1g63830.2 68414.m07224 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains 1 predicted transmembrane domain
          Length = 232

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/85 (24%), Positives = 34/85 (40%)
 Frame = -3

Query: 511 CGSCPFVLDVACSRRVTWSYVLPSSCCIGSHLYRSRLAEERTPRTTLAACVVLCP*RSLV 332
           CG C   +     RR  ++ +   +CC G      R  E + P+  LA  V LC   S+ 
Sbjct: 42  CGPC---VSYMLRRRALYNDMSRYTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVA 98

Query: 331 RLASCEKFPFPYNLSSIHENCIMAY 257
                 +  F    +   +NCI+ +
Sbjct: 99  STRFLLQDEFNIQTTQC-DNCIIGF 122


>At1g63830.1 68414.m07223 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains 1 predicted transmembrane domain
          Length = 232

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/85 (24%), Positives = 34/85 (40%)
 Frame = -3

Query: 511 CGSCPFVLDVACSRRVTWSYVLPSSCCIGSHLYRSRLAEERTPRTTLAACVVLCP*RSLV 332
           CG C   +     RR  ++ +   +CC G      R  E + P+  LA  V LC   S+ 
Sbjct: 42  CGPC---VSYMLRRRALYNDMSRYTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVA 98

Query: 331 RLASCEKFPFPYNLSSIHENCIMAY 257
                 +  F    +   +NCI+ +
Sbjct: 99  STRFLLQDEFNIQTTQC-DNCIIGF 122


>At2g44850.1 68415.m05584 expressed protein 
          Length = 400

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 339 ERYGQRTTQAANVVRGVLSSASRDLYRCDPIQHEEGKTYDQVTRLLQATSRTNGHEPQ 512
           +R  QR  + A+ +R V+    R    CD ++    K  D++ RLL+A +  +G + Q
Sbjct: 318 QRISQRLARGADSLRIVIHGTPRQW--CDELRGWIRKEKDELVRLLKAETENSGGKLQ 373


>At3g14300.1 68416.m01809 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 968

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 180 VRASLL*HDEAVSDSLAVAHQLAQFLHRVRNRRLGVHQHRFGEVHPFPNWRR 25
           ++++++   E  S+SLA+   +AQ L +    R+ V   R    + FPNW R
Sbjct: 597 LKSAMVNSTEFTSNSLAI---VAQVLKKPSKSRIPVQGRRLLNSNSFPNWVR 645


>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 607

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 523 WHVPCGSCPFVLDVACSRRVTWSYVLP-SSCCIGSHLYRSRLAEERT 386
           +H  C  CP     +CSR  T  Y      C +    YR+RL ++ T
Sbjct: 248 YHYSCVPCPEFRKGSCSRGDTCEYAHGIFECWLHPAQYRTRLCKDET 294


>At1g12880.1 68414.m01496 MutT/nudix family protein similar to
           diphosphoinositol polyphosphate phosphohydrolase [Homo
           sapiens] GI:3978224; contains Pfam profile PF00293:
           NUDIX domain
          Length = 203

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 405 DWPRRGLHERRWLPV 361
           DWP R   ERRWL V
Sbjct: 132 DWPERKNRERRWLTV 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,614
Number of Sequences: 28952
Number of extensions: 287107
Number of successful extensions: 961
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)