Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30463
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    28   1.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   3.5  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   6.1  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   6.1  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   8.0  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    25   8.0  

>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 194 SLPPGLQGSSLGKDFSPVYSRPGSVPRTTATFNYDSGSQQSGH 322
           +LPPG   +S+ + + P+YS   ++P++ +   Y       G+
Sbjct: 491 TLPPGAVPTSIPQSYYPIYSPEMAMPQSYSPMYYTHNPPMDGN 533


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 464 DIDSTRLSTRQPSRVIVSYIISATNWIVLSGYWAATNALLNCRRH 330
           D  S++ STR   +    +I  +++   L   W A N+L+ C R+
Sbjct: 442 DSTSSKNSTRTSFKFTPLWIFESSDLAALDIAWTADNSLILCTRN 486


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -1

Query: 456 FHTPEH-TSTFQGYCKLYYQCH 394
           FH PE     ++G+   YY CH
Sbjct: 548 FHLPEELVPLYEGFQNYYYSCH 569


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 354 CIVELQATLWWCPDCWE 304
           C V+L+A  W CP C++
Sbjct: 68  CHVDLRARFWICPFCFQ 84


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 327 TMSPAIQQCIRSCPVTAEYNPVCGTDNITYNNPGRL 434
           T SP  QQC  +   +  Y+     D+I YN   RL
Sbjct: 574 TASPECQQCYYNYCWSGLYDDSAANDDIVYNPTCRL 609


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 315 LGTTTMSPAIQQCIRSCPVTAEYNPVCGTDNITY 416
           +GT+T+SP++++ +  CP     NP  G +  TY
Sbjct: 175 IGTSTLSPSVEEFV--CP-----NPQTGDNGTTY 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,391
Number of Sequences: 5004
Number of extensions: 37960
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)