Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30463
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635...    30   1.2  
02_03_0070 - 14755864-14756157,14756853-14757011                       29   2.7  
03_03_0165 + 14982725-14984128                                         29   3.5  
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406...    28   4.7  
03_01_0525 + 3952095-3952217,3953131-3953614,3953695-3953750,395...    28   4.7  
10_01_0117 + 1447741-1449123                                           28   6.2  
04_04_1375 + 33040329-33040854,33041611-33041838,33041984-330420...    28   6.2  

>08_02_1457 +
           27260841-27260965,27261126-27261246,27263455-27263543,
           27263776-27263860,27263970-27264074,27264446-27264527,
           27264573-27264686,27265029-27265330,27265519-27266114,
           27266216-27266376,27266489-27266592,27266697-27266856,
           27266942-27267105,27267213-27267545,27267640-27267930,
           27268276-27268359,27268430-27268563,27268665-27268892,
           27268993-27269164,27269263-27269517,27269778-27270047
          Length = 1324

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 426 QGYCKLYYQCHKLDCTQRLLGSYEC 352
           Q Y KLYYQ  K++C Q +LG  EC
Sbjct: 194 QPYNKLYYQAIKIECMQ-ILGLSEC 217


>02_03_0070 - 14755864-14756157,14756853-14757011
          Length = 150

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 203 PGLQGSSLGKDFSPVYSRPGSVPRT-----TATFNYDSGSQQSGHHHNVACNSTMH 355
           PG  G+   K  +P   +P + P+T     T  F   S SQ S H   ++ +S+++
Sbjct: 27  PGKLGAQAKKPMTPAAKKPQATPKTKKRRITRLFKKGSSSQSSCHQDELSTHSSVN 82


>03_03_0165 + 14982725-14984128
          Length = 467

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 509 WSLCSSGARQGSENADIDSTRLSTRQPS-RVIVSYIISATNWIVLSGYWAATNALLNCRR 333
           +SL   G   G  + D+    L+TR  +  ++VS    A NW   +     +  L NC  
Sbjct: 162 YSLAGMGCSAGLISLDLARNTLATRPRALALVVSTESIAPNWYTGTD---KSMMLANCLF 218

Query: 332 HCGGAQIV 309
            CGGA ++
Sbjct: 219 RCGGASVL 226


>09_06_0246 +
           21837144-21838194,21838692-21840038,21840576-21840656,
           21842740-21842924
          Length = 887

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 121 LCMSVRNKRQSNDDDDVLDDRYGWELTT 204
           LC+ + +   S+DDDD  DD   W+LTT
Sbjct: 653 LCLYLDSDDDSDDDDD--DDCCAWDLTT 678


>03_01_0525 +
           3952095-3952217,3953131-3953614,3953695-3953750,
           3953942-3954018,3954862-3954958,3955274-3955407,
           3955760-3955825,3955954-3956044
          Length = 375

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -2

Query: 395 TNWIVLSGYWAATNALLNCRRHCGGAQIV 309
           T WI    YWA  N L NC  H G  Q V
Sbjct: 17  TLWIGDLQYWADENYLYNCFAHTGELQSV 45


>10_01_0117 + 1447741-1449123
          Length = 460

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 363 CPVTAEY--NPVCGTDNITYNNPGRLTCAQACGINVSVLRSLPCP 491
           CP++ E   +PV G   ITY+  G      A G   +   S  CP
Sbjct: 27  CPISLELMRDPVVGPTGITYDRAGIEAWLLAAGAGKTAAASSTCP 71


>04_04_1375 +
           33040329-33040854,33041611-33041838,33041984-33042081,
           33042406-33042450,33042678-33042846,33042917-33043026,
           33043983-33044051,33044085-33044158,33044738-33044804,
           33044876-33044988,33045148-33045237,33046030-33046144,
           33046230-33046388
          Length = 620

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 24/89 (26%), Positives = 34/89 (38%)
 Frame = +3

Query: 285 RLTTTRAPNNLGTTTMSPAIQQCIRSCPVTAEYNPVCGTDNITYNNPGRLTCAQACGINV 464
           R + TR P+N+       AIQ C  SC    E        + + +N G  T   AC  N 
Sbjct: 195 RESLTRTPSNMAKP--EHAIQPCTTSCTDKVENTKSTDKKDYSKSNVGYQTNNSACKNNG 252

Query: 465 SVLRSLPCPTATQAPPAKLIKIVNQIIKN 551
           +   + P P A        +K  +  I N
Sbjct: 253 TTSYNQP-PRANSPCEDSTLKEADPFINN 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,011,752
Number of Sequences: 37544
Number of extensions: 274045
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)