Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30463
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17850.1 68414.m02209 expressed protein                             28   5.2  
At5g13820.1 68418.m01615 telomeric DNA-binding protein 1 (TBP1) ...    27   6.8  
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f...    27   6.8  

>At1g17850.1 68414.m02209 expressed protein
          Length = 423

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 399 CHKLDCTQRLLGSYECIVELQATLWWCPDC 310
           C  LDC +  L   EC+V+L+     C DC
Sbjct: 356 CANLDCNRLFLCCAECVVDLKGCC--CSDC 383


>At5g13820.1 68418.m01615 telomeric DNA-binding protein 1 (TBP1)
           identical to telomeric DNA-binding protein 1
           [Arabidopsis thaliana] gi|13641340|gb|AAK31590
          Length = 640

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 230 KDFSPVYSRPGSVPRTTATFNYDSGSQQSGHHHNVACNSTMHS*LPSN 373
           K  S + S  GS+   T   N D+GS+Q  +  ++   S +HS  P +
Sbjct: 138 KRASGLKSLVGSITEETCVVNEDAGSEQGANTFSLKDPSQLHSQSPES 185


>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 144

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 360 SCPVTA-EYNPVCGTDNITYNNPGRLTCAQACGINVSVLRSLPC 488
           SCPV     +PVCG D++TY       CA A    V V++   C
Sbjct: 70  SCPVQCFRPDPVCGEDSVTY----WCGCADALCHGVRVVKQGAC 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,774
Number of Sequences: 28952
Number of extensions: 208369
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)