Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30462
(674 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 165 7e-40
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 91 2e-17
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 91 2e-17
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 74 4e-12
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 69 8e-11
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 68 2e-10
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 64 2e-09
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 60 6e-08
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 58 1e-07
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 53 6e-06
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 52 2e-05
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 51 2e-05
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 51 2e-05
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 50 4e-05
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 50 5e-05
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 49 9e-05
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 48 3e-04
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 45 0.001
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 44 0.003
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 44 0.004
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 42 0.018
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 40 0.055
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 40 0.055
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.055
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 40 0.055
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 39 0.096
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 38 0.29
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 37 0.39
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 37 0.51
UniRef50_Q5NAL6 Cluster: Putative uncharacterized protein P0034C... 34 2.7
UniRef50_Q584L1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 34 3.6
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_A2QIH8 Cluster: Contig An04c0140, complete genome; n=13... 34 3.6
UniRef50_A3B3V9 Cluster: Cation-transporting ATPase; n=7; Oryza ... 33 4.8
UniRef50_A4E8M6 Cluster: Putative uncharacterized protein; n=1; ... 33 8.4
UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=... 33 8.4
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 165 bits (402), Expect = 7e-40
Identities = 79/79 (100%), Positives = 79/79 (100%)
Frame = +3
Query: 273 IGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH 452
IGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH
Sbjct: 76 IGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH 135
Query: 453 AGKRVVLVGILPSGLLLVT 509
AGKRVVLVGILPSGLLLVT
Sbjct: 136 AGKRVVLVGILPSGLLLVT 154
Score = 91.5 bits (217), Expect = 2e-17
Identities = 40/41 (97%), Positives = 40/41 (97%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GPFAFNSCPLRRIPQRYVI TSTRISLGNFKLPKHFNDDYF
Sbjct: 155 GPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 195
Score = 64.5 bits (150), Expect = 2e-09
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 136 RNYDLGNGVMRFSKSKMFHKKAKYKFIG 219
RNYDLGNGVMRFSKSKMFHKKAKYKFIG
Sbjct: 30 RNYDLGNGVMRFSKSKMFHKKAKYKFIG 57
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 91.1 bits (216), Expect = 2e-17
Identities = 47/79 (59%), Positives = 55/79 (69%)
Frame = +3
Query: 273 IGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH 452
IGG KNGG RTV LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH
Sbjct: 68 IGGPKNGGERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRH 127
Query: 453 AGKRVVLVGILPSGLLLVT 509
GKRVVL+ +L SGLLLVT
Sbjct: 128 QGKRVVLLKVLASGLLLVT 146
Score = 68.9 bits (161), Expect = 1e-10
Identities = 28/41 (68%), Positives = 34/41 (82%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GPFA NSCPLRR+ QRYVI TS+++ LG FK+P+H ND YF
Sbjct: 147 GPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYF 187
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 91.1 bits (216), Expect = 2e-17
Identities = 43/81 (53%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Frame = +3
Query: 273 IGGEKNGGTRTVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAG 446
+GG+KNGGTR V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L G
Sbjct: 96 VGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTG 155
Query: 447 RHAGKRVVLVGILPSGLLLVT 509
RH GKRVV + L SGLLLVT
Sbjct: 156 RHRGKRVVFLKQLASGLLLVT 176
Score = 54.0 bits (124), Expect = 3e-06
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GP N PLRR Q++VI TST+I + N K+PKH D YF
Sbjct: 177 GPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYF 217
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 73.7 bits (173), Expect = 4e-12
Identities = 39/79 (49%), Positives = 52/79 (65%)
Frame = +3
Query: 273 IGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH 452
IGG+KNGG R VP++R +YPT++ +R R + ++R ++ GTV ILLAG H
Sbjct: 56 IGGDKNGGKRVVPVQRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAH 113
Query: 453 AGKRVVLVGILPSGLLLVT 509
GKRVV + L SGLLLVT
Sbjct: 114 RGKRVVFLKQLNSGLLLVT 132
Score = 52.8 bits (121), Expect = 7e-06
Identities = 26/43 (60%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKH-FNDD-YF 631
GPF N PLRRIPQ YVI TST I + + KLP+H F D+ YF
Sbjct: 133 GPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYF 175
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 69.3 bits (162), Expect = 8e-11
Identities = 37/79 (46%), Positives = 51/79 (64%)
Frame = +3
Query: 273 IGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH 452
IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ ILLAG +
Sbjct: 49 IGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILILLAGVN 108
Query: 453 AGKRVVLVGILPSGLLLVT 509
GKRVVL+ L SGLLLV+
Sbjct: 109 RGKRVVLLKALKSGLLLVS 127
Score = 55.2 bits (127), Expect = 1e-06
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GP N PLRR+ Q+ VI TSTRI + N K+P+H ND YF
Sbjct: 128 GPLKVNRVPLRRVHQKLVIATSTRIDISNVKVPEHINDTYF 168
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 68.1 bits (159), Expect = 2e-10
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Frame = +3
Query: 273 IGGEKNGGTRTVPLKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAG 446
+ GEKNGG R +PLK+ + YPT++ + + +S +P S+ +R + GTV ILLAG
Sbjct: 72 VKGEKNGGKRVLPLKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAG 131
Query: 447 RHAGKRVVLVGILPSGLLLVT 509
H GKRVV + L +GLL VT
Sbjct: 132 PHRGKRVVFLKQLKTGLLPVT 152
Score = 54.0 bits (124), Expect = 3e-06
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GP+ N CPLRRI Q YVI TST++ L KLP+ +D YF
Sbjct: 153 GPYGVNGCPLRRINQIYVIATSTKLDLSKVKLPEGLDDRYF 193
Score = 32.7 bits (71), Expect = 8.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 136 RNYDLGNGVMRFSKSKMFHKKAKYK 210
+N+ L GV FS+SKMFHK+ +K
Sbjct: 26 KNHKLPGGVWLFSRSKMFHKRGLFK 50
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 64.5 bits (150), Expect = 2e-09
Identities = 36/79 (45%), Positives = 47/79 (59%)
Frame = +3
Query: 273 IGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH 452
IGG KNGG R VP K+ +YP +K + K + +RP++K GT+ ILLAG
Sbjct: 27 IGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVILLAGVF 85
Query: 453 AGKRVVLVGILPSGLLLVT 509
G RVV++ L SG LLVT
Sbjct: 86 RGSRVVVLKQLDSGQLLVT 104
Score = 39.5 bits (88), Expect = 0.073
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GP+A N PL R+ QRYVI TST I + + K ++ YF
Sbjct: 105 GPYAVNRIPLTRVDQRYVIATSTSIDVSKVDV-KKIDNAYF 144
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 59.7 bits (138), Expect = 6e-08
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GPF +N PLRR+ Q YVI TSTRI + F +PKH +D+YF
Sbjct: 124 GPFKYNGVPLRRVNQCYVIATSTRIDISKFDVPKHIDDEYF 164
Score = 58.4 bits (135), Expect = 1e-07
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = +3
Query: 309 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 479
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 480 ILPSGLLLVT 509
L SGLLLVT
Sbjct: 114 ALKSGLLLVT 123
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 58.4 bits (135), Expect = 1e-07
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GPF +N PLRR+ QRYVI T TRI + N K+P ND++F
Sbjct: 130 GPFKYNGVPLRRVNQRYVIATKTRIKIKNIKIPSQLNDEFF 170
Score = 52.0 bits (119), Expect = 1e-05
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +3
Query: 378 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 509
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVT
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVT 129
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 53.2 bits (122), Expect = 6e-06
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +3
Query: 294 GTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 467
G R +P +K+ +YP ++ + + + H ++RP+L+ GT+ ILLAGR GKRV
Sbjct: 19 GERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPGTILILLAGRFRGKRV 76
Query: 468 VLVGILPSGLLLVT 509
+L+ L G+LLVT
Sbjct: 77 ILLKHLGQGVLLVT 90
Score = 36.3 bits (80), Expect = 0.68
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISL 589
GPF N PLRR+ RYVI TS+ + L
Sbjct: 91 GPFKLNGVPLRRVNARYVIATSSTVDL 117
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 51.6 bits (118), Expect = 2e-05
Identities = 32/68 (47%), Positives = 42/68 (61%)
Frame = +3
Query: 306 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 485
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 486 PSGLLLVT 509
SGLLLVT
Sbjct: 69 KSGLLLVT 76
Score = 40.3 bits (90), Expect = 0.042
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRI 583
GPF+FN PLRR+ RYVI TST +
Sbjct: 77 GPFSFNGVPLRRVNSRYVIATSTNV 101
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GPF N PLRRI QRYVI TST+I + + K+ ND YF
Sbjct: 124 GPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYF 164
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/72 (38%), Positives = 41/72 (56%)
Frame = +3
Query: 294 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 473
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 474 VGILPSGLLLVT 509
+ L SGL+L+T
Sbjct: 112 LKQLDSGLILIT 123
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 51.2 bits (117), Expect = 2e-05
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GP N PLRRI Q +VI TS ++++ K+P+H ND+YF
Sbjct: 105 GPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF 145
Score = 45.2 bits (102), Expect = 0.001
Identities = 25/38 (65%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 399 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVT 509
+R L GTV I+LAGRH GKRVV + LP SGLLLVT
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVT 104
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 50.4 bits (115), Expect = 4e-05
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GPF+ N P+RRI Q++V+ TST+I + K+P DDYF
Sbjct: 15 GPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYF 55
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 50.0 bits (114), Expect = 5e-05
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +3
Query: 354 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 509
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VT
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVT 71
Score = 41.9 bits (94), Expect = 0.014
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GP+A N P+RR+ Y+I TST++ + + K F D+YF
Sbjct: 72 GPYALNGVPVRRVNPAYIIATSTKVDVSKADVSK-FTDEYF 111
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 49.2 bits (112), Expect = 9e-05
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +3
Query: 309 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 488
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114
Query: 489 SGLLLVT 509
SGLLLVT
Sbjct: 115 SGLLLVT 121
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GPF N PLRR+ Q YVI TST++ + L K F+D YF
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 47.6 bits (108), Expect = 3e-04
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +3
Query: 330 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 506
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 507 T 509
T
Sbjct: 110 T 110
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GPF N P+RR+ Q YVI TST++ + + K F+D YF
Sbjct: 111 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF 150
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GPF N PLRR+ RYVI TST++S+ + K FN +YF
Sbjct: 67 GPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEK-FNVEYF 106
Score = 37.5 bits (83), Expect = 0.29
Identities = 23/65 (35%), Positives = 39/65 (60%)
Frame = +3
Query: 315 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 494
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 495 LLLVT 509
LL++
Sbjct: 62 TLLIS 66
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 44.4 bits (100), Expect = 0.003
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 372 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVT 509
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVT
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVT 71
Score = 36.7 bits (81), Expect = 0.51
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISL 589
GPF N PLRR+ RYVI TS ++ L
Sbjct: 72 GPFKINGVPLRRVNARYVIATSQKVDL 98
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 43.6 bits (98), Expect = 0.004
Identities = 17/38 (44%), Positives = 28/38 (73%)
Frame = +3
Query: 393 RRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 506
R++R ++++G V I+L G+H GKR ++ +L SGLL V
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAV 105
Score = 33.1 bits (72), Expect = 6.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRI 583
GP+ N PL+R+ RY+I TST I
Sbjct: 107 GPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 41.5 bits (93), Expect = 0.018
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
G F N PLRR+ Q YVI TST++ + + K F+D YF
Sbjct: 173 GSFKINGVPLRRVNQAYVIATSTKVDIPKVNVEK-FDDKYF 212
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 39.9 bits (89), Expect = 0.055
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +3
Query: 423 TVCILLAGRHAGKRVVLVGILPSGLLLVT 509
TV I+L GRH GKRVV + L SGLLLVT
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVT 41
Score = 35.5 bits (78), Expect = 1.2
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GP A N PL R+ Q VI T T++ + K KH D F
Sbjct: 42 GPLALNRVPLCRMHQSVVISTFTKVDICKVKTSKHLTDASF 82
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 39.9 bits (89), Expect = 0.055
Identities = 27/79 (34%), Positives = 43/79 (54%)
Frame = +3
Query: 273 IGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH 452
+ G+KNGGT V L++ K + + + + S P KH + + N TV I++ G+H
Sbjct: 93 VSGDKNGGTGVVKLQKMKMYLGSCKAMAKS----PAFKHEKAV-CNSTPETVLIIITGQH 147
Query: 453 AGKRVVLVGILPSGLLLVT 509
+RVV + L G LL+T
Sbjct: 148 --RRVVFLKQLSRGFLLIT 164
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.055
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 402 RPNLKIGTVCILLAGRHAGKRVVLVGILP 488
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 39.9 bits (89), Expect = 0.055
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
GPF N PL+R+ YVI TST++ + NDDYF
Sbjct: 91 GPFKINGVPLKRVNSAYVIPTSTKVDVTGVN-ANQINDDYF 130
Score = 38.3 bits (85), Expect = 0.17
Identities = 26/53 (49%), Positives = 32/53 (60%)
Frame = +3
Query: 351 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 509
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVT
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVT 90
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 39.1 bits (87), Expect = 0.096
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 402 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 506
RP+LK+GTV I++ G H GKR V+V +G++ +
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKI 87
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 37.5 bits (83), Expect = 0.29
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 405 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTDL-LHSIRAR 536
P + +G + +++AGR AG++VV+V I+ +LVT L+ ++ R
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGAGLNKVKRR 46
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 37.1 bits (82), Expect = 0.39
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 405 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTDLL 518
P +++G VCI AGR AGK V+V IL ++V L+
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLV 39
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 36.7 bits (81), Expect = 0.51
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGN 595
GP +N P+RRI RYVI TST + + +
Sbjct: 67 GPMKYNGVPIRRIDSRYVIATSTTVDISS 95
>UniRef50_Q5NAL6 Cluster: Putative uncharacterized protein
P0034C11.26; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0034C11.26 - Oryza sativa subsp. japonica (Rice)
Length = 168
Score = 34.3 bits (75), Expect = 2.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 170 SPNPRCSTRRLNTSSLAKRTLSLRSPRSYCCCKADWR 280
SP P CS RR ++ R L+L +PR+ CC A R
Sbjct: 62 SPAPACSLRRRWPAAAPARLLALAAPRASACCPAGAR 98
>UniRef50_Q584L1 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 669
Score = 33.9 bits (74), Expect = 3.6
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 167 VSPNPRCSTRRLNTSSLAKRTLSLRSPRSYCCCKADWR*EEWGNQNSTP 313
VSP P C + NTSSL S + + C + W + WGN+ ++P
Sbjct: 410 VSPPPYCYSSVGNTSSLKMAHFSNATGATNNTCISVWTGKSWGNEQNSP 458
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.9 bits (74), Expect = 3.6
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 514 RSVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 350
+SV R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 387 KSVMTLLASSRVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 3.6
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 285 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 416
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_A2QIH8 Cluster: Contig An04c0140, complete genome; n=13;
Pezizomycotina|Rep: Contig An04c0140, complete genome -
Aspergillus niger
Length = 331
Score = 33.9 bits (74), Expect = 3.6
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 401 PTQPEDRNCLHSPRW*TCRQEGCTCWNSAQRSAFSYGPFAFNSCPL 538
P+Q + + +H T Q+GCTCWN + +YGP +NS L
Sbjct: 26 PSQEQAFDAMH-----TAIQKGCTCWNGGE----NYGPLEYNSLVL 62
>UniRef50_A3B3V9 Cluster: Cation-transporting ATPase; n=7; Oryza
sativa|Rep: Cation-transporting ATPase - Oryza sativa
subsp. japonica (Rice)
Length = 1458
Score = 33.5 bits (73), Expect = 4.8
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 465 VVLVGILPSGLLLVTDLLHSIRARYAAFLSA---M*SAPPPEFHSATSNCQNTSMMITSR 635
++ ++ SG +LV L R+RY FLS + S PPE S NTS++ +R
Sbjct: 434 LLFFAVIASGYVLVKGLEDPTRSRYKLFLSCSLILTSVIPPELPMELSIAVNTSLIALAR 493
Query: 636 R 638
R
Sbjct: 494 R 494
>UniRef50_A4E8M6 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 308
Score = 32.7 bits (71), Expect = 8.4
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 438 LAGRHAGKR--VVLVGILPSGLLLVTDLLHSIRARYAAFLSA 557
LAGRH GKR VL+ ++ LLL+ ++H++R R A SA
Sbjct: 267 LAGRHWGKREFAVLIVVVAIVLLLLDIVIHAVRKRRKAKASA 308
>UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=7;
Pezizomycotina|Rep: Translation factor pelota, putative
- Aspergillus clavatus
Length = 410
Score = 32.7 bits (71), Expect = 8.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 301 EQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 402
++Y +V S +TP ++ +P LV VHSAS Y S
Sbjct: 239 QKYIQSVASTTTPALKRLLPSLVVVHSASGYLHS 272
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,069,255
Number of Sequences: 1657284
Number of extensions: 13629796
Number of successful extensions: 33741
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 32554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33718
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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