Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30462
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    46   5e-06
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    32   0.087
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    27   3.3  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   5.7  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
 Frame = +3

Query: 273 IGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCIL 437
           + G KNGG R V P  +    +YP  +E +  +A    RP      ++R +L  GTVCIL
Sbjct: 6   VNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCIL 60

Query: 438 LAGRHAGKRVVLVGILPSGLLL 503
           LAGR  GKRVV++  L   L++
Sbjct: 61  LAGRFRGKRVVVLSQLEDTLVV 82



 Score = 33.5 bits (73), Expect = 0.029
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 509 GPFAFNSCPLRRIPQRYVICTST-RISLGNFKLPKHFNDDYF 631
           GP+  N  P+RR+  RYVI TS  +I +    + K F   YF
Sbjct: 84  GPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK-FTKAYF 124


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.9 bits (69), Expect = 0.087
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = -2

Query: 517 KRSVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 344
           KRS  +S  +   P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 10  KRSTLRS--VAPNPESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 474 VGILPSGLLLVTDLLHSIRARYAAFLSAM*SAPPPE 581
           +GILP  L  + + + S+++R  +  S    APPP+
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSSSGSFVAPPPQ 204


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +1

Query: 307 YPSNVGSPST-----PLRRKSVPHLVAVHSASMY 393
           Y SNV SPS      P R  ++  L+ VHS  MY
Sbjct: 96  YVSNVPSPSDVFLRIPAREATLEELLQVHSQEMY 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,183
Number of Sequences: 5004
Number of extensions: 54880
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)