Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30462
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    49   2e-06
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    49   2e-06
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    46   2e-05
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.6  
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    29   2.8  
At3g17970.1 68416.m02286 chloroplast outer membrane translocon s...    27   8.7  
At3g09032.1 68416.m01061 expressed protein                             27   8.7  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 28/67 (41%), Positives = 42/67 (62%)
 Frame = +3

Query: 309 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 488
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 489 SGLLLVT 509
           SGLLLVT
Sbjct: 115 SGLLLVT 121



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +2

Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
           GPF  N  PLRR+ Q YVI TST++ +    L K F+D YF
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 28/67 (41%), Positives = 42/67 (62%)
 Frame = +3

Query: 309 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 488
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 489 SGLLLVT 509
           SGLLLVT
Sbjct: 115 SGLLLVT 121



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +2

Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
           GPF  N  PLRR+ Q YVI TST++ +    L K F+D YF
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/67 (40%), Positives = 41/67 (61%)
 Frame = +3

Query: 309 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 488
           P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLS 114

Query: 489 SGLLLVT 509
           SGLLLVT
Sbjct: 115 SGLLLVT 121



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 21/41 (51%), Positives = 25/41 (60%)
 Frame = +2

Query: 509 GPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYF 631
           GPF  N  PLRR+ Q YVI TST+I +      K F+D YF
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF 161


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 309 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 398
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 269 ADWR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWPS 376
           A W+  E   Q ++PQ   V  L  H G+  C++WWPS
Sbjct: 94  AIWQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


>At3g17970.1 68416.m02286 chloroplast outer membrane translocon
           subunit, putative similar to Toc64 [Pisum sativum]
           GI:7453538; contains Pfam profile PF00515 TPR Domain
          Length = 589

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 468 VLVGILPSGLLLVTDLLH-SIRARYAAFLSAM*SAPPPE 581
           VL+G+  +G+L++T  L  ++R  + AF+  +   PPP+
Sbjct: 10  VLLGLGLAGILMLTKKLKKTVREDFGAFIDKLMLLPPPQ 48


>At3g09032.1 68416.m01061 expressed protein
          Length = 146

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 435 LLAGRHAGKRVVLVGILPSGLL---LVTDLLHSIRARYAAFL 551
           L +  H+ +RVVLVGIL  GL        L+  I AR+A  L
Sbjct: 29  LSSSHHSRRRVVLVGILSFGLRSSPAARKLIQRIGARFAKTL 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,427,974
Number of Sequences: 28952
Number of extensions: 311653
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)