Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30461
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    83   3e-17
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.46 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   4.3  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.6  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    25   7.6  
SPCC1494.02c |taf13||transcription factor TFIID complex subunit ...    25   10.0 

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 47/106 (44%), Positives = 64/106 (60%)
 Frame = +1

Query: 262 DIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGR 441
           ++V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL  
Sbjct: 67  NLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILAN 124

Query: 442 FKELQFFTGESMDCDGMFAMMELETLMVRKYQFMMFFKHGLEEEKF 579
           FK+  F+ GESMD D M  +M      +  Y  M+FFK GL  EKF
Sbjct: 125 FKDYDFYIGESMDPDAMVVLMNYREDGITPY--MIFFKDGLVSEKF 168



 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +2

Query: 65  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 241
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 242 SAVET 256
              ET
Sbjct: 60  EGTET 64


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 259 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 405
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 102  ISSPVIMSL*IFILMDWRRLKII 34
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 124 HFVGVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 14
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 459 ELKFLKPAEDVFHYFVHVCFKYFNLVR 379
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 644 NKKTKVSSASL-ELLSYFLSNI*NFSSSRPCLKNIMNWYLRTIKVSNSIM 498
           +K  K+  A + +LL      I NFS +   LK  + W  +   VSN+ +
Sbjct: 191 SKDEKIRLADIYDLLGELSLEIENFSQASQDLKTALEWKEKVYNVSNNTL 240


>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
           Taf13|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 521 IKVSNSIMANMPSQSIDSPVKN*SSLNLPRMSFITLFMFVL 399
           ++ SN  +A  P Q + S ++    +N    SFITL  F+L
Sbjct: 91  LRSSNFSVAGHPFQGVLSRIRIFLRINTKMHSFITLNKFIL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,515
Number of Sequences: 5004
Number of extensions: 54107
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)