Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30461
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 66 3e-11
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 36 0.039
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 1.9
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 30 1.9
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 29 3.4
11_01_0791 + 6627961-6630702 29 4.5
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 4.5
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 5.9
10_02_0054 + 4612464-4612823 28 7.8
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 28 7.8
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 65.7 bits (153), Expect = 3e-11
Identities = 42/106 (39%), Positives = 57/106 (53%)
Frame = +1
Query: 259 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILG 438
VDIV RL E F DKK + ++K Y+K L AKL+ ++ E FK N+ K +LG
Sbjct: 68 VDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLG 123
Query: 439 RFKELQFFTGESMDCDGMFAMMELETLMVRKYQFMMFFKHGLEEEK 576
+ K+LQFF GESM DG + ++F HGL+E K
Sbjct: 124 KLKDLQFFVGESMHDDGGLVFAYYKDGATD--PTFLYFSHGLKEVK 167
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Frame = +2
Query: 65 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 235
M +Y+D++TGDE+ SD++ + ++ +++EV G+ V + D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 236 TD 241
D
Sbjct: 60 VD 61
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 35.5 bits (78), Expect = 0.039
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -3
Query: 546 HHELVFAYHQSL*FHHGKHAITIHRLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVR 379
H + H+ FHH H ++ PSK+L ++L+ FH F ++C++Y + R
Sbjct: 232 HPRAIQEAHRPKDFHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGR 290
Query: 378 RL 373
+L
Sbjct: 291 KL 292
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 304 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 477
G +K TL L++Y+ +V A L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 478 D 480
+
Sbjct: 1195 E 1195
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 101 MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVETEL 262
+FS VDE I +E+ + G+I ++GF G D+AVE E+
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEI 155
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = +1
Query: 280 RLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQF 459
++V + FG TL +K KL + A V NMN+V +DIL + +F
Sbjct: 188 KIVSVFGFGGLGKTTL-VKVIYDKLEPGFQCGAFVTVSRINPNMNRVFRDILYYLDKKKF 246
Query: 460 FTGESMDCDGMFAMMELETLMVRKYQFMM 546
++ D + EL+ + K F++
Sbjct: 247 TNSYTLMLDEKQLINELQEFLQNKRYFIV 275
>11_01_0791 + 6627961-6630702
Length = 913
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 271 LNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEE-KAPDQVEVFKTNMNKVMKDILGRFK 447
L H L + Y +K + ++ K ++KLEE + + VE K ++ + +K+++ + +
Sbjct: 647 LRHLLADRYEDENKSEFRYFIGVQAPKYLSKLEELQTLETVEASK-DLAEQLKELM-QIR 704
Query: 448 ELQFFTGESMDCDGMFAMM 504
+ S DC +FA +
Sbjct: 705 SIWIDNISSADCGNIFATL 723
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 277 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 456
H L+ A D S +L ++++ V +E+A Q+EV K + K+I EL
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236
Query: 457 FFTGE 471
+ E
Sbjct: 237 VLSKE 241
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 379 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 281
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
>10_02_0054 + 4612464-4612823
Length = 119
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = -2
Query: 307 HRRRMFRLACGSGLCQLRLDGRVRALVSLFSRRIKTLDLDITLCSRHQPTGH 152
H +R RL GSG QLRL V A L R+++ D +RH GH
Sbjct: 35 HGQRPLRLPSGSGRRQLRLSSNVPAGNQLRRRQLRREDR-----ARHYVWGH 81
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 418 VMKDILGRFKELQFFTGESMDCDGMFAMMELETLMVRKYQFMMFFKHGLEEEKF 579
VMKD+ GR L F+T ++C M + +LE + +KY+ F G+ KF
Sbjct: 418 VMKDLKGRVVLLDFWTYCCINC--MHVLPDLE-FIEKKYKDKPFTVVGVHSAKF 468
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,619,938
Number of Sequences: 37544
Number of extensions: 321091
Number of successful extensions: 696
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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