Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30461
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)          29   4.5  
SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)           28   6.0  
SB_20744| Best HMM Match : CH (HMM E-Value=0.92)                       28   7.9  

>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
          Length = 466

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +3

Query: 420 NERHPRQV*GTSVLYWGVYGL*W--HVCH----DGIRDFDGTQIPIHDVFQTWSRRREIL 581
           N+RH R + GTSV Y G Y   W  H  H      +RD  GT +      +  SR R + 
Sbjct: 360 NKRHVRDICGTSVTY-GTYAE-WASHTGHMRNKRHVRDICGTSVTYGTYAEQASRTRHMR 417

Query: 582 NVR 590
           N R
Sbjct: 418 NKR 420


>SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)
          Length = 720

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 546 HHELVFAYHQSL*FHHGKHAITIHRLPSKELK 451
           +H+  F +H+    HH KH  T HR+PS+E K
Sbjct: 119 NHDKTFLHHK----HH-KHMGTSHRIPSRERK 145


>SB_20744| Best HMM Match : CH (HMM E-Value=0.92)
          Length = 1103

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = -1

Query: 602 SYFLSNI*NFSSSRPCLKNIMNWYLRTIKVSNSIMANMPSQSIDSPVKN*SSLNLPRMSF 423
           SY   NI +FS+SRP  K+    Y   + VSNSI  +       +P    + + LP    
Sbjct: 577 SYQSRNIPSFSTSRPHDKHGGQTYSSGLPVSNSIHQDKDIPDRANPDSTNAPVTLPEPGT 636

Query: 422 ITLFMFVLNTS 390
            T+    LN S
Sbjct: 637 TTVSDRPLNDS 647


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,345,722
Number of Sequences: 59808
Number of extensions: 372572
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)