Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30461
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 467 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 369
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 467 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 369
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 636 FFIYLSSCPHPGR 674
           FF+ LSSC  P R
Sbjct: 9   FFLLLSSCTRPSR 21


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 636 FFIYLSSCPHPGR 674
           FF+ LSSC  P R
Sbjct: 9   FFLLLSSCTRPSR 21


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -3

Query: 129 NFIL*VSENISSPVIMSL*IFILMDWRRLKIIKTE 25
           +F+L VS  I++ V  +  IF+ + W + ++++ +
Sbjct: 230 SFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRD 264


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 436 GRFKELQFFTGESMDCDGMFAMMELETLMVRKYQFMMFFKHGL 564
           G++  +Q    +  + +    M+EL  L +    F +  KHGL
Sbjct: 73  GQYARVQQSMPDGWETEISDQMLELRDLPISGKPFQIRMKHGL 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,717
Number of Sequences: 438
Number of extensions: 3681
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)